Variant report

Variant	rs62008609
Chromosome Location	chr15:92623259-92623260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12903305	0.92[EUR][1000 genomes]
rs12910142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12915368	0.89[EUR][1000 genomes]
rs17644604	0.82[EUR][1000 genomes]
rs17644691	0.92[EUR][1000 genomes]
rs17695712	0.92[EUR][1000 genomes]
rs1878558	0.92[EUR][1000 genomes]
rs1878559	0.92[EUR][1000 genomes]
rs34044069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34153958	0.90[EUR][1000 genomes]
rs34555786	0.92[EUR][1000 genomes]
rs34650528	0.92[EUR][1000 genomes]
rs34970645	0.92[EUR][1000 genomes]
rs34970707	0.92[EUR][1000 genomes]
rs35319070	0.84[EUR][1000 genomes]
rs35329561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35884194	0.92[EUR][1000 genomes]
rs62008574	0.85[EUR][1000 genomes]
rs62008600	0.92[EUR][1000 genomes]
rs62008601	0.92[EUR][1000 genomes]
rs62008602	0.92[EUR][1000 genomes]
rs62008603	0.92[EUR][1000 genomes]
rs62008606	0.92[EUR][1000 genomes]
rs7173864	0.92[EUR][1000 genomes]
rs871370	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
3	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:92618800-92625200	Weak transcription	Ovary	ovary
5	chr15:92619000-92625000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:92619200-92630400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:92619400-92625200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:92619600-92625000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:92620400-92625000	Weak transcription	Brain Substantia Nigra	brain
13	chr15:92620600-92625200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:92620800-92624800	Weak transcription	Fetal Brain Female	brain
15	chr15:92620800-92625200	Weak transcription	Right Atrium	heart
16	chr15:92620800-92625200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:92620800-92635600	Weak transcription	Spleen	Spleen
18	chr15:92621000-92624800	Weak transcription	Fetal Brain Male	brain
19	chr15:92621000-92625000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:92621000-92625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:92621000-92625200	Weak transcription	Left Ventricle	heart
22	chr15:92621000-92625600	Weak transcription	Liver	Liver
23	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:92621000-92639200	Weak transcription	Lung	lung
26	chr15:92621200-92624800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr15:92621200-92625000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:92621200-92625000	Weak transcription	Brain Angular Gyrus	brain
29	chr15:92621400-92625200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:92621400-92634200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr15:92621400-92638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:92621600-92625000	Weak transcription	Right Ventricle	heart
33	chr15:92621800-92625200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:92622000-92625200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:92622400-92623600	Enhancers	Brain Hippocampus Middle	brain
36	chr15:92622800-92623400	Enhancers	Brain Anterior Caudate	brain
37	chr15:92622800-92624000	Enhancers	Brain Cingulate Gyrus	brain
38	chr15:92622800-92625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:92623200-92623400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:92623200-92623400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr15:92623200-92623600	Weak transcription	Fetal Heart	heart

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