Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15218874..15225564-chr6:15243422..15249789,18	MCF-7	breast:
2	chr6:15223678..15226269-chr6:15228000..15229602,2	K562	blood:
3	chr6:15222881..15225842-chr6:15243690..15246286,2	K562	blood:
4	chr6:15221003..15223875-chr6:15224055..15226661,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.82[ASN][1000 genomes]
rs12527989	0.97[ASN][1000 genomes]
rs12529516	0.97[ASN][1000 genomes]
rs12529596	0.97[ASN][1000 genomes]
rs12529633	0.97[ASN][1000 genomes]
rs12530202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1969755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100628	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58894024	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59583140	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59928045	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6909967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73359662	0.97[ASN][1000 genomes]
rs73375535	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375542	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375558	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375561	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375565	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747401	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:15222400-15227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:15222600-15239400	Weak transcription	Right Atrium	heart
4	chr6:15224400-15227400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:15224400-15227600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:15224400-15227600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:15224400-15227800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:15224400-15228000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:15224400-15242000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:15224600-15228000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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