Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15231604..15237314-chr6:15244200..15247522,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12527989	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529516	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529596	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529633	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530202	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17687052	0.97[ASN][1000 genomes]
rs1969755	0.97[ASN][1000 genomes]
rs2295954	0.97[ASN][1000 genomes]
rs34100628	0.82[ASN][1000 genomes]
rs58894024	0.82[ASN][1000 genomes]
rs59583140	0.82[ASN][1000 genomes]
rs59928045	0.82[ASN][1000 genomes]
rs6909967	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375535	0.82[ASN][1000 genomes]
rs73375542	0.82[ASN][1000 genomes]
rs73375558	0.82[ASN][1000 genomes]
rs73375561	0.82[ASN][1000 genomes]
rs73375565	0.90[ASN][1000 genomes]
rs7747401	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15222600-15239400	Weak transcription	Right Atrium	heart
2	chr6:15224400-15242000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15228400-15235200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:15228400-15239600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15232400-15235200	Enhancers	Primary B cells from cord blood	blood
6	chr6:15232600-15235200	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:15233000-15234800	Enhancers	GM12878-XiMat	blood

Quick Search: