Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15215822..15217492-chr6:15248343..15250007,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.97[ASN][1000 genomes]
rs12527989	0.82[ASN][1000 genomes]
rs12529516	0.82[ASN][1000 genomes]
rs12529596	0.82[ASN][1000 genomes]
rs12529633	0.82[ASN][1000 genomes]
rs12530202	0.82[ASN][1000 genomes]
rs17687052	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1969755	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2295954	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34100628	1.00[ASN][1000 genomes]
rs58894024	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59583140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928045	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909967	0.82[ASN][1000 genomes]
rs73359662	0.82[ASN][1000 genomes]
rs73375535	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375565	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747401	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
2	chr6:15211400-15218200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15211600-15222200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15214800-15216200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:15215200-15216000	Enhancers	Primary B cells from cord blood	blood
7	chr6:15215200-15216000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15215200-15216200	Enhancers	Primary monocytes fromperipheralblood	blood

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