Variant report

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15211461..15213647-chr6:15364255..15366792,2	K562	blood:
2	chr6:15211292..15214275-chr6:15361319..15363079,2	K562	blood:
3	chr6:15211327..15214253-chr6:15443742..15445346,2	K562	blood:
4	chr6:15207140..15215305-chr6:15243300..15250227,33	K562	blood:
5	chr6:15212901..15214487-chr6:15252379..15253919,2	K562	blood:
6	chr6:15211290..15214684-chr6:15251009..15254684,5	K562	blood:
7	chr6:15210286..15214983-chr6:15243593..15250047,26	K562	blood:
8	chr6:15210646..15214635-chr6:15377351..15380909,4	K562	blood:
9	chr6:15156210..15158890-chr6:15211476..15214661,3	K562	blood:
10	chr6:15210423..15214380-chr6:15237542..15240375,3	K562	blood:
11	chr6:15211459..15213624-chr6:15378508..15380909,2	K562	blood:
12	chr6:14867887..14869558-chr6:15211671..15213641,2	K562	blood:
13	chr6:15211295..15213609-chr6:15314527..15316724,2	K562	blood:
14	chr6:15210476..15213974-chr6:15388595..15391826,3	K562	blood:
15	chr6:15086750..15092578-chr6:15208564..15214623,13	K562	blood:
16	chr6:14685709..14687762-chr6:15211791..15214339,2	K562	blood:
17	chr6:15211412..15213944-chr6:16209890..16212085,2	K562	blood:
18	chr6:15211921..15214474-chr6:15385655..15388402,2	K562	blood:
19	chr6:15197961..15202582-chr6:15208962..15214320,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.97[ASN][1000 genomes]
rs12527989	0.82[ASN][1000 genomes]
rs12529516	0.82[ASN][1000 genomes]
rs12529596	0.82[ASN][1000 genomes]
rs12529633	0.82[ASN][1000 genomes]
rs12530202	0.82[ASN][1000 genomes]
rs17687052	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1969755	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2295954	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34100628	1.00[ASN][1000 genomes]
rs58894024	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59583140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928045	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909967	0.82[ASN][1000 genomes]
rs73359662	0.82[ASN][1000 genomes]
rs73375535	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375565	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747401	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
2	chr6:15211400-15218200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15211600-15222200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:15213000-15214800	Enhancers	HepG2	liver

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