Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15220208..15222554-chr6:15245175..15248225,3	K562	blood:
2	chr6:15088434..15092772-chr6:15219565..15225354,13	MCF-7	breast:
3	chr6:15218874..15225564-chr6:15243422..15249789,18	MCF-7	breast:
4	chr6:14732703..14735058-chr6:15220960..15223796,2	MCF-7	breast:
5	chr6:15221003..15223875-chr6:15224055..15226661,2	K562	blood:
6	chr6:15220573..15223155-chr6:15261429..15263583,2	MCF-7	breast:
7	chr6:15063403..15067702-chr6:15220647..15223786,6	MCF-7	breast:
8	chr6:15220208..15222504-chr6:15245175..15247096,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.82[ASN][1000 genomes]
rs12527989	0.97[ASN][1000 genomes]
rs12529516	0.97[ASN][1000 genomes]
rs12529596	0.97[ASN][1000 genomes]
rs12529633	0.97[ASN][1000 genomes]
rs12530202	0.97[ASN][1000 genomes]
rs17687052	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295954	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34100628	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58894024	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59583140	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59928045	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6909967	0.97[ASN][1000 genomes]
rs73359662	0.97[ASN][1000 genomes]
rs73375535	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375542	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375558	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375561	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73375565	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747401	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
2	chr6:15211600-15222200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:15219000-15223200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:15219200-15223800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:15219200-15224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:15219400-15224000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:15219400-15224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:15219800-15222000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:15220400-15222200	Weak transcription	Placenta	Placenta
11	chr6:15220600-15223000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:15220600-15223400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:15221200-15221400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:15221200-15222200	Weak transcription	Ovary	ovary
15	chr6:15221200-15222600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:15221200-15223200	Weak transcription	Primary B cells from cord blood	blood

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