Variant report

Variant	rs34100628
Chromosome Location	chr6:15201124-15201125
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524343	0.97[ASN][1000 genomes]
rs12527989	0.82[ASN][1000 genomes]
rs12529516	0.82[ASN][1000 genomes]
rs12529596	0.82[ASN][1000 genomes]
rs12529633	0.82[ASN][1000 genomes]
rs12530202	0.82[ASN][1000 genomes]
rs17687052	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1969755	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2295954	0.85[ASN][1000 genomes]
rs58894024	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59583140	1.00[ASN][1000 genomes]
rs59928045	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6909967	0.82[ASN][1000 genomes]
rs73359662	0.82[ASN][1000 genomes]
rs73375535	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73375542	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73375558	1.00[ASN][1000 genomes]
rs73375561	1.00[ASN][1000 genomes]
rs73375565	0.92[ASN][1000 genomes]
rs7747401	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15200600-15205200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:15200600-15206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:15200800-15201800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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