Variant report

Variant	rs177546
Chromosome Location	chr11:16926732-16926733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16924323..16927618-chr11:16930447..16932852,3	K562	blood:
2	chr11:16914888..16916923-chr11:16925227..16926853,2	MCF-7	breast:
3	chr11:16924785..16927963-chr11:16940444..16943241,3	MCF-7	breast:
4	chr11:16924323..16927213-chr11:16930206..16932852,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11024074	0.80[ASN][1000 genomes]
rs12418111	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1638456	0.81[ASN][1000 genomes]
rs1638457	0.84[ASN][1000 genomes]
rs16933675	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16933680	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16933682	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs177544	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs177551	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs177554	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35005405	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35109048	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs378863	0.84[ASN][1000 genomes]
rs381815	0.86[ASN][1000 genomes]
rs388968	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs391332	0.81[ASN][1000 genomes]
rs393633	0.84[ASN][1000 genomes]
rs397373	0.81[ASN][1000 genomes]
rs407354	0.84[ASN][1000 genomes]
rs413858	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs414219	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs414992	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs422272	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs425325	0.84[ASN][1000 genomes]
rs427429	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs428840	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs432046	0.84[ASN][1000 genomes]
rs434899	0.84[ASN][1000 genomes]
rs435206	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs445205	0.84[ASN][1000 genomes]
rs445431	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs446518	0.84[ASN][1000 genomes]
rs448671	0.86[ASN][1000 genomes]
rs4757445	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58542530	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59828007	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61882035	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61882036	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61882037	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61882038	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758402	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926335	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
2	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
3	chr11:16919400-16927000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
5	chr11:16920400-16927000	Weak transcription	Right Atrium	heart
6	chr11:16921600-16927000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:16921600-16927200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:16921800-16927000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:16922000-16934000	Weak transcription	HepG2	liver
10	chr11:16922200-16927200	Weak transcription	Fetal Lung	lung
11	chr11:16923400-16927400	Enhancers	Fetal Intestine Large	intestine
12	chr11:16923800-16927800	Enhancers	Fetal Heart	heart
13	chr11:16924200-16927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:16924800-16927000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:16924800-16927000	Weak transcription	A549	lung
16	chr11:16924800-16927400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:16925000-16927000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:16925000-16927200	Weak transcription	Esophagus	oesophagus
19	chr11:16925000-16927200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:16925000-16927400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
22	chr11:16925600-16926800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:16925800-16927200	Weak transcription	Small Intestine	intestine
25	chr11:16925800-16927400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:16926000-16927000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:16926000-16927000	Weak transcription	Stomach Mucosa	stomach
28	chr11:16926000-16927000	Weak transcription	GM12878-XiMat	blood
29	chr11:16926400-16927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:16926600-16926800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:16926600-16927400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:16926600-16927400	Enhancers	HMEC	breast
33	chr11:16926600-16927600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:16926600-16927600	Enhancers	Gastric	stomach
35	chr11:16926600-16927600	Enhancers	Left Ventricle	heart
36	chr11:16926600-16927800	Genic enhancers	Fetal Intestine Small	intestine
37	chr11:16926600-16927800	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links