Variant report

Variant	rs35109048
Chromosome Location	chr11:16935205-16935206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16931317..16933544-chr11:16934483..16936096,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10741713	0.92[ASN][1000 genomes]
rs10766360	0.90[ASN][1000 genomes]
rs11024087	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11024090	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12418111	0.83[ASN][1000 genomes]
rs16933675	0.83[ASN][1000 genomes]
rs16933680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933683	0.92[ASN][1000 genomes]
rs16933684	0.90[ASN][1000 genomes]
rs177544	0.87[AMR][1000 genomes]
rs177546	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs177551	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs177554	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs177559	0.92[ASN][1000 genomes]
rs177560	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs177561	0.92[ASN][1000 genomes]
rs177562	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs177563	0.92[ASN][1000 genomes]
rs1860024	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1860025	0.90[ASN][1000 genomes]
rs2108603	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2190752	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2215086	0.92[ASN][1000 genomes]
rs2353367	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2883150	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35005405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs388968	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs413858	0.83[ASN][1000 genomes]
rs414219	0.87[AFR][1000 genomes]
rs422272	0.83[ASN][1000 genomes]
rs427429	0.87[AFR][1000 genomes]
rs435206	0.87[AFR][1000 genomes]
rs445431	0.87[AFR][1000 genomes]
rs4756875	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4756876	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4757445	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757449	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4757451	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4757452	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4757454	0.89[ASN][1000 genomes]
rs4757456	0.89[ASN][1000 genomes]
rs4757457	0.89[ASN][1000 genomes]
rs58542530	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59828007	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61882035	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61882036	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61882037	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61882038	0.83[ASN][1000 genomes]
rs6486326	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6486329	0.90[ASN][1000 genomes]
rs7111470	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7396552	0.90[ASN][1000 genomes]
rs758402	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7924696	0.90[ASN][1000 genomes]
rs7926335	0.81[ASN][1000 genomes]
rs7929137	0.89[ASN][1000 genomes]
rs982811	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:16927800-16944400	Weak transcription	A549	lung
6	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
7	chr11:16932600-16935400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:16932800-16935400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16933200-16939000	Weak transcription	HMEC	breast
11	chr11:16933400-16936800	Enhancers	Fetal Heart	heart
12	chr11:16934000-16935400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:16934000-16935400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16934000-16935600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:16934000-16936200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:16934200-16935400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:16934200-16936800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:16934400-16935400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:16934400-16935600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:16934400-16939400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:16934600-16936200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:16934600-16939400	Weak transcription	Fetal Intestine Large	intestine
23	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:16934600-16941400	Weak transcription	Liver	Liver
26	chr11:16934600-16942200	Weak transcription	Ovary	ovary
27	chr11:16934800-16935400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:16934800-16936800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:16935000-16936400	Weak transcription	Right Ventricle	heart
30	chr11:16935000-16939200	Weak transcription	Gastric	stomach
31	chr11:16935200-16935400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:16935200-16935400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
33	chr11:16935200-16935600	Strong transcription	Fetal Intestine Small	intestine
34	chr11:16935200-16936200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:16935200-16936600	Weak transcription	Right Atrium	heart
36	chr11:16935200-16939000	Weak transcription	Pancreas	Pancrea
37	chr11:16935200-16939200	Weak transcription	Stomach Mucosa	stomach
38	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart

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