Variant report

Variant	rs59828007
Chromosome Location	chr11:16927793-16927794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16924785..16927963-chr11:16940444..16943241,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12418111	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1638457	0.80[ASN][1000 genomes]
rs16933675	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16933680	0.80[AMR][1000 genomes]
rs16933682	0.80[AMR][1000 genomes]
rs177544	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs177546	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs177551	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs177554	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35005405	0.80[AMR][1000 genomes]
rs35109048	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs378863	0.80[ASN][1000 genomes]
rs381815	0.82[ASN][1000 genomes]
rs388968	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs393633	0.80[ASN][1000 genomes]
rs407354	0.80[ASN][1000 genomes]
rs413858	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs414219	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs414992	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs422272	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs425325	0.80[ASN][1000 genomes]
rs427429	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs428840	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs432046	0.80[ASN][1000 genomes]
rs434899	0.80[ASN][1000 genomes]
rs435206	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs445205	0.80[ASN][1000 genomes]
rs445431	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs446518	0.80[ASN][1000 genomes]
rs448671	0.82[ASN][1000 genomes]
rs4757445	0.82[ASN][1000 genomes]
rs58542530	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882035	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882036	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882037	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61882038	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs758402	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7926335	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
2	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
3	chr11:16922000-16934000	Weak transcription	HepG2	liver
4	chr11:16923800-16927800	Enhancers	Fetal Heart	heart
5	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
6	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:16926600-16927800	Genic enhancers	Fetal Intestine Small	intestine
8	chr11:16926600-16927800	Enhancers	Pancreas	Pancrea
9	chr11:16927000-16927800	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:16927000-16927800	Enhancers	Fetal Muscle Leg	muscle
11	chr11:16927000-16927800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:16927000-16927800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:16927000-16927800	Enhancers	Stomach Mucosa	stomach
14	chr11:16927000-16927800	Enhancers	A549	lung
15	chr11:16927200-16927800	Enhancers	Fetal Lung	lung
16	chr11:16927200-16927800	Enhancers	Fetal Stomach	stomach
17	chr11:16927200-16927800	Enhancers	Small Intestine	intestine
18	chr11:16927200-16932600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:16927400-16927800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:16927400-16927800	Enhancers	HSMMtube	muscle
21	chr11:16927400-16930600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:16927400-16931200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:16927400-16932400	Weak transcription	HMEC	breast
24	chr11:16927400-16932600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:16927400-16932800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:16927400-16934800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:16927600-16927800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr11:16927600-16929800	Weak transcription	GM12878-XiMat	blood
29	chr11:16927600-16930000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:16927600-16930400	Weak transcription	Left Ventricle	heart
31	chr11:16927600-16931000	Weak transcription	Esophagus	oesophagus
32	chr11:16927600-16931000	Weak transcription	Gastric	stomach
33	chr11:16927600-16931000	Weak transcription	Right Atrium	heart
34	chr11:16927600-16931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:16927600-16932000	Weak transcription	Right Ventricle	heart
36	chr11:16927600-16932800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:16927600-16933600	Weak transcription	Brain Anterior Caudate	brain
38	chr11:16927600-16934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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