Variant report

Variant	rs1784492
Chromosome Location	chr8:107673304-107673305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1580289	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1601249	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1676420	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1681879	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1681904	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1681905	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784469	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1784472	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1784473	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1784480	0.80[EUR][1000 genomes]
rs1784494	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2126581	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2282509	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2627788	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627790	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs725906	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776932	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776933	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776934	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776938	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776939	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs776941	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs776944	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776946	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776948	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs776949	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776950	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776951	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776954	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776960	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs776961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776962	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs776963	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776965	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107670800-107675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107670800-107675800	Weak transcription	Spleen	Spleen
3	chr8:107670800-107685800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:107671000-107675800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:107671200-107674200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:107671200-107674800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:107671200-107675800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:107671200-107675800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:107671200-107697200	Weak transcription	HSMM	muscle
10	chr8:107671400-107673400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:107671400-107676600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:107671600-107674400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr8:107671600-107674400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr8:107671600-107675000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr8:107671600-107675800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:107672000-107675800	Weak transcription	Right Atrium	heart
17	chr8:107672200-107673800	Enhancers	Adipose Nuclei	Adipose
18	chr8:107672200-107675800	Weak transcription	Esophagus	oesophagus
19	chr8:107672200-107675800	Weak transcription	Left Ventricle	heart
20	chr8:107672200-107675800	Weak transcription	Ovary	ovary
21	chr8:107672200-107675800	Weak transcription	Pancreas	Pancrea
22	chr8:107672200-107675800	Weak transcription	Thymus	Thymus
23	chr8:107672200-107677200	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:107672200-107677200	Weak transcription	Lung	lung
25	chr8:107672200-107677400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
27	chr8:107672400-107673400	Weak transcription	Liver	Liver
28	chr8:107672400-107673600	Enhancers	Fetal Lung	lung
29	chr8:107672400-107673600	Enhancers	HepG2	liver
30	chr8:107672400-107685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr8:107672600-107673400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:107672600-107673400	Enhancers	Gastric	stomach
34	chr8:107672600-107673800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:107672600-107675200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:107672600-107676000	Weak transcription	Fetal Intestine Large	intestine
37	chr8:107672600-107678800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:107672600-107678800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:107672600-107679200	Weak transcription	Primary T cells from cord blood	blood
40	chr8:107672600-107679200	Weak transcription	NHEK	skin
41	chr8:107672600-107681200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:107672600-107682200	Weak transcription	Aorta	Aorta
43	chr8:107672600-107683600	Weak transcription	Hela-S3	cervix
44	chr8:107672600-107684400	Weak transcription	Fetal Intestine Small	intestine
45	chr8:107672600-107684800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:107672600-107686000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:107672600-107696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:107672800-107673400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr8:107672800-107673400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:107672800-107674400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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