Variant report

Variant	rs1784480
Chromosome Location	chr8:107781036-107781037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107780431..107782315-chr8:107783713..107785641,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1601249	0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1676420	0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs1681879	0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1681904	0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1681905	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784469	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784472	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1784473	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1784492	0.80[EUR][1000 genomes]
rs1784494	0.82[EUR][1000 genomes]
rs2126581	0.82[JPT][hapmap]
rs2282509	0.82[JPT][hapmap]
rs2627788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2627790	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs725906	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776932	0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs776933	0.87[JPT][hapmap];0.83[EUR][1000 genomes]
rs776934	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs776938	0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776939	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776941	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776944	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776946	0.81[EUR][1000 genomes]
rs776949	0.82[EUR][1000 genomes]
rs776950	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs776951	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs776954	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs776960	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs776961	0.81[EUR][1000 genomes]
rs776962	0.81[EUR][1000 genomes]
rs776963	0.82[EUR][1000 genomes]
rs776965	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7834014	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
2	chr8:107776000-107785000	Weak transcription	HSMMtube	muscle
3	chr8:107776800-107782800	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr8:107777200-107782600	Active TSS	Right Atrium	heart
5	chr8:107777400-107782600	Active TSS	Right Ventricle	heart
6	chr8:107777600-107784600	Weak transcription	HUVEC	blood vessel
7	chr8:107777800-107784000	Weak transcription	Fetal Kidney	kidney
8	chr8:107777800-107785000	Weak transcription	NHLF	lung
9	chr8:107778000-107782600	Active TSS	Left Ventricle	heart
10	chr8:107778000-107784600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:107778000-107785000	Weak transcription	Fetal Lung	lung
12	chr8:107778200-107781600	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr8:107778200-107785000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:107778400-107784800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr8:107779000-107782400	Active TSS	Fetal Muscle Leg	muscle
16	chr8:107779000-107784200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:107779200-107785000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:107779800-107785000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:107780800-107781600	Active TSS	Fetal Muscle Trunk	muscle
20	chr8:107780800-107782600	Active TSS	Psoas Muscle	Psoas
21	chr8:107781000-107781400	Flanking Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links