Variant report

Variant	rs1784494
Chromosome Location	chr8:107686072-107686073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107679723..107681395-chr8:107684179..107686589,2	MCF-7	breast:
2	chr8:107685113..107687431-chr8:107693590..107695570,2	K562	blood:
3	chr8:107680913..107683388-chr8:107685068..107687950,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1580289	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1601249	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1676420	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681879	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1681904	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681905	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784469	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1784472	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784473	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1784480	0.82[EUR][1000 genomes]
rs1784492	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2126581	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2282509	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2627788	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627790	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725906	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776932	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776938	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776939	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs776941	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776944	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776946	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs776948	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs776949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776950	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776954	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776960	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776961	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776963	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776965	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1799660	chr8:107679505-107689755	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107671200-107697200	Weak transcription	HSMM	muscle
2	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
3	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:107672600-107696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:107672800-107696000	Weak transcription	Fetal Kidney	kidney
6	chr8:107674400-107696000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:107676200-107697400	Weak transcription	Left Ventricle	heart
8	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
9	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
11	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
12	chr8:107681600-107696600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:107682200-107696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:107683600-107692800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
16	chr8:107684800-107686600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr8:107684800-107687000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:107684800-107687200	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr8:107684800-107688800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:107685400-107687200	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr8:107685600-107686400	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr8:107685600-107686600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr8:107685600-107686600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr8:107685800-107686200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:107685800-107686400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
26	chr8:107685800-107686400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
27	chr8:107685800-107686400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:107685800-107686400	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr8:107685800-107686400	ZNF genes & repeats	Liver	Liver
30	chr8:107685800-107686400	Enhancers	Esophagus	oesophagus
31	chr8:107685800-107686400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:107685800-107686400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
33	chr8:107685800-107686600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:107685800-107686600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:107685800-107686600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr8:107685800-107686600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr8:107685800-107686600	ZNF genes & repeats	Fetal Stomach	stomach
38	chr8:107685800-107687200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:107686000-107686200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:107686000-107686400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr8:107686000-107686600	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr8:107686000-107686800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:107686000-107687200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
44	chr8:107686000-107697000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr8:107686000-107709200	Weak transcription	Gastric	stomach

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