Variant report

Variant	rs776961
Chromosome Location	chr8:107675364-107675365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1580289	0.92[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1601249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1676420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681886	0.90[CHB][hapmap]
rs1681904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681905	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1784469	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784472	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784473	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784480	0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs1784492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1784494	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126581	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2282509	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2627788	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2627790	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132803	0.81[YRI][hapmap]
rs725906	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776938	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776939	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776941	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776944	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776946	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776948	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs776949	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776954	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776960	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776962	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776963	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107670800-107675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107670800-107675800	Weak transcription	Spleen	Spleen
3	chr8:107670800-107685800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:107671000-107675800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:107671200-107675800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:107671200-107675800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:107671200-107697200	Weak transcription	HSMM	muscle
8	chr8:107671400-107676600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:107671600-107675800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:107672000-107675800	Weak transcription	Right Atrium	heart
11	chr8:107672200-107675800	Weak transcription	Esophagus	oesophagus
12	chr8:107672200-107675800	Weak transcription	Left Ventricle	heart
13	chr8:107672200-107675800	Weak transcription	Ovary	ovary
14	chr8:107672200-107675800	Weak transcription	Pancreas	Pancrea
15	chr8:107672200-107675800	Weak transcription	Thymus	Thymus
16	chr8:107672200-107677200	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:107672200-107677200	Weak transcription	Lung	lung
18	chr8:107672200-107677400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
20	chr8:107672400-107685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:107672600-107676000	Weak transcription	Fetal Intestine Large	intestine
23	chr8:107672600-107678800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:107672600-107678800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:107672600-107679200	Weak transcription	Primary T cells from cord blood	blood
26	chr8:107672600-107679200	Weak transcription	NHEK	skin
27	chr8:107672600-107681200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr8:107672600-107682200	Weak transcription	Aorta	Aorta
29	chr8:107672600-107683600	Weak transcription	Hela-S3	cervix
30	chr8:107672600-107684400	Weak transcription	Fetal Intestine Small	intestine
31	chr8:107672600-107684800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:107672600-107686000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:107672600-107696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:107672800-107675400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:107672800-107675600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:107672800-107675600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:107672800-107675600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:107672800-107675600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr8:107672800-107675800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:107672800-107675800	Active TSS	GM12878-XiMat	blood
41	chr8:107672800-107677800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr8:107672800-107680600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr8:107672800-107685800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr8:107672800-107696000	Weak transcription	Fetal Kidney	kidney
45	chr8:107673000-107675600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr8:107673000-107675600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:107673000-107675800	Weak transcription	Primary B cells from cord blood	blood
48	chr8:107673000-107675800	Weak transcription	K562	blood
49	chr8:107673000-107676000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:107673000-107676400	Weak transcription	Rectal Mucosa Donor 31	rectum

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