Variant report

Variant	rs776960
Chromosome Location	chr8:107730557-107730558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107727853..107731882-chr8:107733080..107735284,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1580289	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1601249	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1676420	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1681879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681886	0.90[CHB][hapmap]
rs1681904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1784469	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1784473	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784479	0.83[AMR][1000 genomes]
rs1784480	0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784492	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784494	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126581	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2282509	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2627788	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2627790	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs725906	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776932	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776939	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776941	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs776944	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776946	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776948	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs776949	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776954	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776961	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776962	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776963	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
5	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
12	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:107719000-107738200	Weak transcription	NHEK	skin
14	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
15	chr8:107719600-107731000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr8:107719600-107732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:107719600-107737000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:107719600-107737400	Weak transcription	Psoas Muscle	Psoas
19	chr8:107719600-107738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:107719600-107738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:107719600-107738400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:107719600-107739600	Weak transcription	Left Ventricle	heart
23	chr8:107719600-107762400	Weak transcription	Lung	lung
24	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
25	chr8:107719600-107775200	Weak transcription	Gastric	stomach
26	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
27	chr8:107719800-107731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr8:107719800-107738200	Weak transcription	Ovary	ovary
29	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:107720000-107732400	Weak transcription	HepG2	liver
31	chr8:107720000-107738200	Weak transcription	HMEC	breast
32	chr8:107720600-107738200	Weak transcription	Aorta	Aorta
33	chr8:107720600-107738200	Weak transcription	Fetal Stomach	stomach
34	chr8:107720600-107738400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr8:107720800-107736000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:107721200-107738200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:107723200-107738000	Weak transcription	K562	blood
38	chr8:107724000-107732600	Weak transcription	Osteobl	bone
39	chr8:107724000-107737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:107724000-107738000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:107724200-107731000	Weak transcription	Primary T cells from cord blood	blood
42	chr8:107724200-107731000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:107724200-107731000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:107724200-107731000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr8:107724200-107732400	Weak transcription	Fetal Kidney	kidney
46	chr8:107724200-107736000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:107724200-107736800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr8:107724200-107738200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr8:107724200-107738200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:107724200-107738200	Weak transcription	Fetal Thymus	thymus

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