Variant report

Variant	rs1681905
Chromosome Location	chr8:107757885-107757886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1580289	0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1601249	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1676420	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681879	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1681886	0.90[CHB][hapmap]
rs1681904	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784469	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1784472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784473	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1784479	0.83[AMR][1000 genomes]
rs1784480	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784492	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784494	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126581	0.87[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2282509	0.80[CEU][hapmap];0.95[CHB][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2627788	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627790	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725906	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776932	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776933	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776934	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776938	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776939	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs776941	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs776944	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776946	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs776948	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs776949	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776950	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776951	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776954	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776961	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776962	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776963	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776965	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107762400	Weak transcription	Lung	lung
2	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
3	chr8:107719600-107775200	Weak transcription	Gastric	stomach
4	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
5	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107739000-107775200	Weak transcription	A549	lung
7	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
8	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:107740000-107775200	Weak transcription	Ovary	ovary
10	chr8:107740200-107767400	Weak transcription	K562	blood
11	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
12	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
13	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
14	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
15	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:107749400-107775200	Weak transcription	HMEC	breast
19	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr8:107751400-107758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:107751600-107761000	Strong transcription	Primary B cells from cord blood	blood
24	chr8:107751600-107763000	Weak transcription	HSMMtube	muscle
25	chr8:107753000-107762800	Weak transcription	Aorta	Aorta
26	chr8:107753200-107771400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:107753600-107763600	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
29	chr8:107753800-107758000	Weak transcription	NHEK	skin
30	chr8:107753800-107775200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr8:107754200-107775200	Weak transcription	Pancreas	Pancrea
32	chr8:107754400-107766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:107754800-107775200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:107755200-107764600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:107755200-107772000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr8:107755400-107771600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:107755600-107763600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:107755800-107758000	Weak transcription	Thymus	Thymus
39	chr8:107755800-107760800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:107755800-107760800	Weak transcription	Fetal Intestine Small	intestine
41	chr8:107755800-107763000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:107755800-107771200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:107756000-107758600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:107756000-107775000	Weak transcription	Fetal Heart	heart
46	chr8:107756400-107758000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr8:107756400-107761800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:107756400-107766800	Weak transcription	Primary T cells from cord blood	blood
49	chr8:107756400-107767000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr8:107756400-107772400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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