Variant report

Variant	rs725906
Chromosome Location	chr8:107721116-107721117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1580289	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1601249	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1676420	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1681886	0.90[CHB][hapmap]
rs1681904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681905	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1784469	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784472	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784473	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1784480	0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1784492	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1784494	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126581	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2282509	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2627788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2627790	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132803	0.80[YRI][hapmap]
rs776932	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776939	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776946	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776948	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs776949	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs776950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776960	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs776961	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776962	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776963	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs776965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
7	chr8:107695000-107725800	Weak transcription	NHLF	lung
8	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:107698000-107723000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:107706000-107723600	Weak transcription	Brain Anterior Caudate	brain
13	chr8:107707800-107723600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:107708800-107725600	Weak transcription	Fetal Brain Male	brain
16	chr8:107710000-107723800	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:107710200-107722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:107710400-107724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:107710400-107725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
21	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
24	chr8:107716800-107721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:107717800-107726000	Weak transcription	Brain Substantia Nigra	brain
27	chr8:107718000-107721400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr8:107718000-107728600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr8:107718200-107721200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr8:107718600-107721200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:107718600-107721200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:107718600-107721200	Strong transcription	Adipose Nuclei	Adipose
33	chr8:107718600-107721200	Strong transcription	Fetal Intestine Large	intestine
34	chr8:107718600-107721200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr8:107718600-107721200	Strong transcription	Fetal Thymus	thymus
36	chr8:107718600-107721400	Strong transcription	Primary B cells from cord blood	blood
37	chr8:107718600-107723800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr8:107718600-107726400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:107718600-107727600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:107718800-107723800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr8:107719000-107738200	Weak transcription	NHEK	skin
42	chr8:107719200-107725400	Weak transcription	Pancreas	Pancrea
43	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
44	chr8:107719400-107723400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:107719400-107723800	Weak transcription	A549	lung
46	chr8:107719400-107723800	Weak transcription	NH-A	brain
47	chr8:107719400-107725400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr8:107719600-107721600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:107719600-107722200	Weak transcription	NHDF-Ad	bronchial
50	chr8:107719600-107722800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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