Variant report

Variant	rs1880395
Chromosome Location	chr11:15606279-15606280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1010653	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766271	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832480	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832481	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023644	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023650	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272473	0.81[EUR][1000 genomes]
rs1552305	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880393	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351050	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2351057	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4032487	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4756814	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7103393	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106201	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117096	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121567	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729416	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7934042	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15602200-15607600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:15602600-15607600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:15602800-15607600	Weak transcription	Psoas Muscle	Psoas
5	chr11:15604200-15618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:15605000-15606800	Enhancers	Right Atrium	heart
7	chr11:15605200-15606600	Enhancers	Brain Germinal Matrix	brain
8	chr11:15605200-15606800	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:15605600-15607400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:15606000-15606400	Enhancers	Left Ventricle	heart
11	chr11:15606200-15606400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:15606200-15606400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:15606200-15606600	Enhancers	Right Ventricle	heart
14	chr11:15606200-15606800	Enhancers	Fetal Muscle Leg	muscle
15	chr11:15606200-15611800	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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