Variant report

Variant	rs4032487
Chromosome Location	chr11:15589219-15589220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1010653	0.86[ASN][1000 genomes]
rs10766257	0.83[EUR][1000 genomes]
rs10766258	0.84[EUR][1000 genomes]
rs10766267	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10766268	0.94[EUR][1000 genomes]
rs10766269	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10766271	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832446	0.84[EUR][1000 genomes]
rs10832452	0.83[EUR][1000 genomes]
rs10832466	0.94[EUR][1000 genomes]
rs10832471	0.95[EUR][1000 genomes]
rs10832472	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10832474	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10832480	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10832481	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023593	0.89[EUR][1000 genomes]
rs11023595	0.84[EUR][1000 genomes]
rs11023596	0.84[EUR][1000 genomes]
rs11023597	0.84[EUR][1000 genomes]
rs11023598	0.84[EUR][1000 genomes]
rs11023600	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11023609	0.94[EUR][1000 genomes]
rs11023612	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11023644	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11023650	0.87[ASN][1000 genomes]
rs12270000	0.89[EUR][1000 genomes]
rs12272473	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12284635	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1552305	0.82[ASN][1000 genomes]
rs1880393	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1880395	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2351046	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2351050	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2351057	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129900	0.84[EUR][1000 genomes]
rs4756814	0.88[ASN][1000 genomes]
rs6486251	0.86[EUR][1000 genomes]
rs7103393	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7106201	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106594	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7117096	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7118895	0.83[AFR][1000 genomes]
rs7121567	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs729416	0.87[ASN][1000 genomes]
rs7927872	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15581800-15591000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:15585000-15590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:15588200-15591000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
7	chr11:15588400-15593800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:15588600-15589600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:15588600-15589600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:15588800-15590000	Weak transcription	Pancreas	Pancrea
11	chr11:15589000-15590800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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