Variant report

Variant	rs10766268
Chromosome Location	chr11:15573505-15573506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:15573371-15573999	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr11:15573359-15573948	SK-N-SH	brain:	n/a	n/a
3	TCF12	chr11:15573448-15573882	SK-N-SH	brain:	n/a	n/a
4	EP300	chr11:15572980-15574632	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr11:15573503-15573760	SK-N-SH	brain:	n/a	n/a
6	MXI1	chr11:15573345-15574274	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr11:15573345-15573873	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr11:15573304-15573828	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254946	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10734236	0.91[ASN][1000 genomes]
rs10766257	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766258	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766260	0.92[ASN][1000 genomes]
rs10766263	0.92[ASN][1000 genomes]
rs10766267	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766269	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10766271	0.94[EUR][1000 genomes]
rs10832444	0.88[ASN][1000 genomes]
rs10832446	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832452	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832466	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832467	0.96[ASN][1000 genomes]
rs10832471	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832472	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832474	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832481	0.81[EUR][1000 genomes]
rs11023593	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023595	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023596	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023597	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023598	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023599	0.93[ASN][1000 genomes]
rs11023600	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023609	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023612	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12270000	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272473	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12278599	0.92[ASN][1000 genomes]
rs12284635	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1880393	0.81[EUR][1000 genomes]
rs2351044	0.92[ASN][1000 genomes]
rs2351046	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351050	0.95[EUR][1000 genomes]
rs2351057	0.93[EUR][1000 genomes]
rs4032487	0.94[EUR][1000 genomes]
rs4129900	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4388847	0.96[ASN][1000 genomes]
rs6486249	0.92[ASN][1000 genomes]
rs6486250	0.94[ASN][1000 genomes]
rs6486251	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7106201	0.94[EUR][1000 genomes]
rs7106594	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118895	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7121567	0.81[EUR][1000 genomes]
rs7130722	0.90[ASN][1000 genomes]
rs7479720	0.90[ASN][1000 genomes]
rs7927872	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950188	0.91[ASN][1000 genomes]
rs9651572	0.86[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15569400-15573600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:15569800-15573600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:15570000-15573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:15572000-15573800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:15572200-15573800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:15573000-15573600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:15573000-15573800	Weak transcription	Right Atrium	heart
9	chr11:15573400-15573600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:15573400-15574000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:15573400-15574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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