Variant report

Variant	rs10766257
Chromosome Location	chr11:15508197-15508198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15505528..15508330-chr11:15511468..15514048,2	MCF-7	breast:
2	chr11:15505909..15508417-chr11:15510028..15514073,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10734236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10766258	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766260	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10766263	0.94[ASN][1000 genomes]
rs10766267	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766268	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766269	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10766271	0.83[EUR][1000 genomes]
rs10832444	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10832446	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832452	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832466	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832467	0.92[ASN][1000 genomes]
rs10832471	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832472	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832474	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023593	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023595	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023596	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023597	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023598	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023599	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023600	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023609	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023612	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12270000	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272473	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278599	0.99[ASN][1000 genomes]
rs12284635	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351044	0.83[ASN][1000 genomes]
rs2351046	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2351050	0.84[EUR][1000 genomes]
rs2351057	0.82[EUR][1000 genomes]
rs4032487	0.83[EUR][1000 genomes]
rs4129900	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4388847	0.92[ASN][1000 genomes]
rs6486249	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6486250	0.97[ASN][1000 genomes]
rs6486251	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106201	0.83[EUR][1000 genomes]
rs7106594	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118895	0.91[ASN][1000 genomes]
rs7130722	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7479720	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7927872	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950188	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9651572	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15506600-15510600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:15507600-15508800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15507600-15514800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links