Variant report

Variant	rs6486251
Chromosome Location	chr11:15521553-15521554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10734236	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10741679	0.83[CHD][hapmap]
rs10766257	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766258	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766260	0.98[ASN][1000 genomes]
rs10766261	0.81[AFR][1000 genomes]
rs10766262	0.86[AFR][1000 genomes]
rs10766263	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10766267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766268	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766269	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766271	0.86[EUR][1000 genomes]
rs10832444	0.94[ASN][1000 genomes]
rs10832446	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832451	0.83[AFR][1000 genomes]
rs10832452	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832466	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832467	0.96[ASN][1000 genomes]
rs10832471	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832472	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832474	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023593	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023595	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023596	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023597	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023598	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023599	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023600	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023609	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023612	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12270000	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272473	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12278599	0.98[ASN][1000 genomes]
rs12284635	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2351044	0.86[ASN][1000 genomes]
rs2351046	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351050	0.87[EUR][1000 genomes]
rs2351057	0.85[EUR][1000 genomes]
rs4032487	0.86[EUR][1000 genomes]
rs4129900	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4388847	0.96[ASN][1000 genomes]
rs6486249	0.98[ASN][1000 genomes]
rs6486250	0.99[ASN][1000 genomes]
rs7106201	0.86[EUR][1000 genomes]
rs7106594	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118895	0.94[ASN][1000 genomes]
rs7130722	0.95[ASN][1000 genomes]
rs7479720	0.95[ASN][1000 genomes]
rs7480915	0.85[YRI][hapmap]
rs7481721	0.82[AFR][1000 genomes]
rs7927872	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950188	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9651572	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6486251	DKFZp686O24166	cis	cerebellum	SCAN
rs6486251	TMEM86A	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
2	chr11:15514800-15522400	Enhancers	Fetal Intestine Small	intestine
3	chr11:15515800-15522000	Weak transcription	Placenta	Placenta
4	chr11:15519600-15522600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:15521200-15521600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:15521200-15521800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:15521200-15522400	Enhancers	Psoas Muscle	Psoas
8	chr11:15521200-15522600	Enhancers	Fetal Muscle Leg	muscle

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