Variant report

Variant	rs7479720
Chromosome Location	chr11:15504748-15504749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:15504668-15505028	GM12878	blood:	n/a	n/a
2	ZNF384	chr11:15504653-15505064	GM12878	blood:	n/a	n/a
3	EBF1	chr11:15504746-15505409	GM12878	blood:	n/a	chr11:15504953-15504964 chr11:15504955-15504965 chr11:15504955-15504964
4	RUNX3	chr11:15504747-15505101	GM12878	blood:	n/a	n/a
5	RUNX3	chr11:15504717-15505073	GM12878	blood:	n/a	n/a
6	SPI1	chr11:15504671-15505249	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000253072	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10734236	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766257	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10766258	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10766260	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766263	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766267	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10766268	0.90[ASN][1000 genomes]
rs10766269	0.85[ASN][1000 genomes]
rs10832444	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832446	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10832452	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10832466	0.94[ASN][1000 genomes]
rs10832467	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832471	0.91[ASN][1000 genomes]
rs10832472	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10832474	0.85[ASN][1000 genomes]
rs11023593	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11023595	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11023596	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11023597	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11023598	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11023599	0.97[ASN][1000 genomes]
rs11023600	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11023609	0.93[ASN][1000 genomes]
rs11023612	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12270000	0.95[ASN][1000 genomes]
rs12272473	0.82[ASN][1000 genomes]
rs12278599	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12284635	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2351044	0.82[ASN][1000 genomes]
rs2351046	0.84[ASN][1000 genomes]
rs4129900	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4388847	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486249	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6486250	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6486251	0.95[ASN][1000 genomes]
rs7106594	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7118895	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7130722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927872	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7950188	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651572	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15500200-15506000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:15502200-15505200	Enhancers	Liver	Liver
3	chr11:15504000-15506000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:15504000-15506400	Enhancers	GM12878-XiMat	blood

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