Variant report

Variant	rs10832474
Chromosome Location	chr11:15574345-15574346
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr11:15574047-15574372	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr11:15574054-15574450	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr11:15573980-15574400	H1-hESC	embryonic stem cell:	n/a	n/a
4	HDAC2	chr11:15574009-15574370	H1-hESC	embryonic stem cell:	n/a	n/a
5	EP300	chr11:15572980-15574632	SK-N-SH	brain:	n/a	n/a
6	MAX	chr11:15574149-15574349	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INSC-1	chr11:15574305-15574459	NONHSAT018151

Variant related genes	Relation type
ENSG00000254946	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10734236	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs10766257	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10766258	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10766260	0.87[ASN][1000 genomes]
rs10766263	0.87[ASN][1000 genomes]
rs10766267	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766268	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10766269	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10766271	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10832444	0.83[ASN][1000 genomes]
rs10832446	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832452	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832466	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832467	0.91[ASN][1000 genomes]
rs10832471	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832472	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832481	0.80[EUR][1000 genomes]
rs11023593	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023595	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023596	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023597	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023598	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023599	0.88[ASN][1000 genomes]
rs11023600	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023609	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023612	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12270000	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12272473	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12278599	0.87[ASN][1000 genomes]
rs12284635	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351044	0.92[ASN][1000 genomes]
rs2351046	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351050	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2351057	0.94[EUR][1000 genomes]
rs4032487	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4129900	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4388847	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6486249	0.87[ASN][1000 genomes]
rs6486250	0.89[ASN][1000 genomes]
rs6486251	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7106201	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7106594	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7118895	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7121567	0.80[EUR][1000 genomes]
rs7130722	0.85[ASN][1000 genomes]
rs7479720	0.85[ASN][1000 genomes]
rs7927872	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950188	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9651572	0.81[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15573400-15574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:15573600-15574800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:15573600-15575000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr11:15573600-15575400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:15573800-15574600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
7	chr11:15573800-15575000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:15573800-15575600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr11:15574000-15574600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:15574000-15574800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
12	chr11:15574200-15574600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:15574200-15574600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
14	chr11:15574200-15574600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:15574200-15575400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:15574200-15576200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:15574200-15576800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:15574200-15576800	Weak transcription	Fetal Lung	lung

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