Variant report

Variant	rs12270000
Chromosome Location	chr11:15528886-15528887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15527389..15529322-chr11:15534222..15536632,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10734236	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10741679	0.83[CHD][hapmap]
rs10766257	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766258	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766260	0.98[ASN][1000 genomes]
rs10766263	0.98[ASN][1000 genomes]
rs10766267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766268	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766269	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766271	0.89[EUR][1000 genomes]
rs10832444	0.94[ASN][1000 genomes]
rs10832446	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832452	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832458	0.84[AFR][1000 genomes]
rs10832459	0.84[AFR][1000 genomes]
rs10832466	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832467	0.96[ASN][1000 genomes]
rs10832471	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832474	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023593	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023595	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023596	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023597	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023598	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023599	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023600	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023609	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023612	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272473	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12278599	0.98[ASN][1000 genomes]
rs12284635	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2351044	0.86[ASN][1000 genomes]
rs2351046	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351050	0.90[EUR][1000 genomes]
rs2351057	0.88[EUR][1000 genomes]
rs4032487	0.89[EUR][1000 genomes]
rs4129900	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4388847	0.96[ASN][1000 genomes]
rs6486249	0.98[ASN][1000 genomes]
rs6486250	0.99[ASN][1000 genomes]
rs6486251	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106201	0.89[EUR][1000 genomes]
rs7106594	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118895	0.94[ASN][1000 genomes]
rs7130722	0.95[ASN][1000 genomes]
rs7479720	0.95[ASN][1000 genomes]
rs7480915	0.85[YRI][hapmap]
rs7927872	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950188	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9651572	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12270000	TMEM86A	cis	parietal	SCAN
rs12270000	DKFZp686O24166	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15527200-15529800	Enhancers	Fetal Intestine Large	intestine
2	chr11:15527400-15529800	Enhancers	Fetal Intestine Small	intestine
3	chr11:15528600-15529800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:15528800-15529200	Enhancers	NH-A	brain
5	chr11:15528800-15529400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:15528800-15529400	Enhancers	Placenta	Placenta
7	chr11:15528800-15529600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr11:15528800-15529800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:15528800-15529800	Enhancers	Stomach Mucosa	stomach

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