Variant report

Variant	rs2351046
Chromosome Location	chr11:15580347-15580348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10734236	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs10766257	0.93[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10766258	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10766260	0.86[ASN][1000 genomes]
rs10766263	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10766267	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766268	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766271	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832444	0.83[ASN][1000 genomes]
rs10832446	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832452	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832466	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832467	0.90[ASN][1000 genomes]
rs10832471	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832472	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832481	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11023593	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023595	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023596	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023597	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023598	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023599	0.87[ASN][1000 genomes]
rs11023600	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023609	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023612	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12270000	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12272473	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278599	0.86[ASN][1000 genomes]
rs12284635	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1880393	0.81[EUR][1000 genomes]
rs2351044	0.98[ASN][1000 genomes]
rs2351050	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2351057	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4032487	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4129900	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4388847	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6486249	0.86[ASN][1000 genomes]
rs6486250	0.88[ASN][1000 genomes]
rs6486251	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106201	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7106594	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118895	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7121567	0.81[EUR][1000 genomes]
rs7130722	0.84[ASN][1000 genomes]
rs7479720	0.84[ASN][1000 genomes]
rs7927872	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950188	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9651572	0.80[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2351046	COPB1	cis	cerebellum	SCAN
rs2351046	TMEM86A	cis	parietal	SCAN
rs2351046	CYP2R1	cis	parietal	SCAN
rs2351046	DKFZp686O24166	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
3	chr11:15574600-15582000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:15577400-15584400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:15578800-15580600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:15578800-15581000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:15579000-15580400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:15579200-15580400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:15579200-15580600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:15579200-15581400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:15579200-15582000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:15579400-15581200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:15579600-15580400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:15579600-15581200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:15579600-15581200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:15580000-15580400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:15580000-15580400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr11:15580000-15580400	Enhancers	Brain Germinal Matrix	brain

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