Variant report

Variant	rs12278599
Chromosome Location	chr11:15515438-15515439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15515373..15516180-chr11:15636691..15637625,4	MCF-7	breast:
2	chr11:15515373..15516180-chr11:15636691..15637607,7	MCF-7	breast:
3	chr11:15452166..15452849-chr11:15515237..15515829,2	MCF-7	breast:
4	chr11:15512584..15515913-chr11:15518069..15521001,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10734236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[ASN][1000 genomes]
rs10766258	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10766260	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766263	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766267	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10766268	0.92[ASN][1000 genomes]
rs10766269	0.88[ASN][1000 genomes]
rs10832444	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832446	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10832452	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832466	0.97[ASN][1000 genomes]
rs10832467	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832471	0.94[ASN][1000 genomes]
rs10832472	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10832474	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[ASN][1000 genomes]
rs11023593	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11023595	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11023596	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11023597	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11023598	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11023599	0.99[ASN][1000 genomes]
rs11023600	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11023609	0.96[ASN][1000 genomes]
rs11023612	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12270000	0.98[ASN][1000 genomes]
rs12272473	0.83[ASN][1000 genomes]
rs12284635	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2351044	0.85[ASN][1000 genomes]
rs2351046	0.86[ASN][1000 genomes]
rs4129900	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4388847	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6486249	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486250	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486251	0.98[ASN][1000 genomes]
rs7106594	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7118895	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7130722	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7479720	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927872	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7950188	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9651572	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15512200-15520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
3	chr11:15514800-15516200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15514800-15516600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:15514800-15520200	Enhancers	Liver	Liver
6	chr11:15514800-15522400	Enhancers	Fetal Intestine Small	intestine
7	chr11:15515200-15515800	Enhancers	Placenta	Placenta
8	chr11:15515200-15516200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:15515400-15515800	Enhancers	Psoas Muscle	Psoas
10	chr11:15515400-15516000	Enhancers	Fetal Muscle Leg	muscle
11	chr11:15515400-15516000	Enhancers	Stomach Mucosa	stomach
12	chr11:15515400-15516000	Enhancers	HSMM	muscle
13	chr11:15515400-15516200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:15515400-15516600	Enhancers	Pancreas	Pancrea

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