Variant report

Variant	rs10832444
Chromosome Location	chr11:15497017-15497018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10734236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741679	0.83[CHD][hapmap]
rs10766257	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10766258	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10766260	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766263	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766267	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs10766268	0.88[ASN][1000 genomes]
rs10766269	0.84[ASN][1000 genomes]
rs10832446	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10832452	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10832466	0.92[ASN][1000 genomes]
rs10832467	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832471	0.90[ASN][1000 genomes]
rs10832472	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10832474	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs11023593	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11023595	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11023596	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11023597	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11023598	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11023599	0.95[ASN][1000 genomes]
rs11023600	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11023609	0.92[ASN][1000 genomes]
rs11023612	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12270000	0.94[ASN][1000 genomes]
rs12272473	0.81[ASN][1000 genomes]
rs12278599	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12284635	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2351044	0.81[ASN][1000 genomes]
rs2351046	0.83[ASN][1000 genomes]
rs4129900	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4388847	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6486249	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486250	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6486251	0.94[ASN][1000 genomes]
rs7106594	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7118895	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7130722	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7479720	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927872	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7950188	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9651572	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10832444	TMEM86A	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15494000-15497800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:15495400-15497400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:15496600-15499600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:15496800-15499600	Weak transcription	Fetal Intestine Large	intestine

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