Variant report

Variant	rs2351057
Chromosome Location	chr11:15598025-15598026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15597934..15599847-chr11:15603625..15606035,2	K562	blood:
2	chr11:15595876..15598536-chr11:15605124..15607978,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1010653	0.92[ASN][1000 genomes]
rs10766257	0.82[EUR][1000 genomes]
rs10766258	0.83[EUR][1000 genomes]
rs10766267	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs10766268	0.93[EUR][1000 genomes]
rs10766269	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10766271	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832446	0.83[EUR][1000 genomes]
rs10832452	0.82[EUR][1000 genomes]
rs10832466	0.93[EUR][1000 genomes]
rs10832471	0.94[EUR][1000 genomes]
rs10832472	0.94[EUR][1000 genomes]
rs10832474	0.85[CEU][hapmap];0.82[CHB][hapmap];0.94[EUR][1000 genomes]
rs10832480	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10832481	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023593	0.88[EUR][1000 genomes]
rs11023595	0.83[EUR][1000 genomes]
rs11023596	0.83[EUR][1000 genomes]
rs11023597	0.83[EUR][1000 genomes]
rs11023598	0.83[EUR][1000 genomes]
rs11023600	0.87[EUR][1000 genomes]
rs11023609	0.93[EUR][1000 genomes]
rs11023612	0.90[EUR][1000 genomes]
rs11023644	0.94[ASN][1000 genomes]
rs11023650	0.93[ASN][1000 genomes]
rs12270000	0.88[EUR][1000 genomes]
rs12272473	0.97[EUR][1000 genomes]
rs12284635	0.94[EUR][1000 genomes]
rs1552305	0.88[ASN][1000 genomes]
rs1880393	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880395	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351044	0.80[ASN][1000 genomes]
rs2351046	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2351050	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4032487	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129900	0.83[EUR][1000 genomes]
rs4756814	0.94[ASN][1000 genomes]
rs6486251	0.85[EUR][1000 genomes]
rs7103393	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7106201	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106594	0.83[EUR][1000 genomes]
rs7117096	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7121567	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs729416	0.93[ASN][1000 genomes]
rs7927872	0.88[EUR][1000 genomes]
rs7934042	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
3	chr11:15592400-15601200	Weak transcription	Right Atrium	heart
4	chr11:15596400-15601600	Weak transcription	Psoas Muscle	Psoas
5	chr11:15596800-15601400	Weak transcription	Stomach Mucosa	stomach
6	chr11:15597000-15603000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:15597600-15603200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:15597800-15599000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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