Variant report

Variant	rs729416
Chromosome Location	chr11:15615360-15615361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010653	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766271	0.94[ASN][1000 genomes]
rs10832480	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832481	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023644	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023650	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552305	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1880393	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1880395	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351050	0.91[ASN][1000 genomes]
rs2351057	0.93[ASN][1000 genomes]
rs4032487	0.87[ASN][1000 genomes]
rs4756814	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103393	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106201	0.94[ASN][1000 genomes]
rs7117096	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121567	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7934042	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15604200-15618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:15606800-15616000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:15608600-15616200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:15611000-15626800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:15612000-15616800	Weak transcription	Ovary	ovary
6	chr11:15612800-15616400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:15613200-15617200	Weak transcription	Left Ventricle	heart
8	chr11:15613600-15617200	Weak transcription	Right Atrium	heart
9	chr11:15613600-15626000	Weak transcription	Right Ventricle	heart
10	chr11:15615000-15616600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:15615000-15618200	Enhancers	Fetal Muscle Leg	muscle
12	chr11:15615200-15615400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:15615200-15615400	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links