Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15606391..15608024-chr11:15609071..15611869,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1010653	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766267	0.82[CHB][hapmap]
rs10766271	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10832474	0.86[CHB][hapmap]
rs10832480	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832481	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023644	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023650	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552305	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880393	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880395	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351050	0.92[ASN][1000 genomes]
rs2351057	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4032487	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4756814	0.99[ASN][1000 genomes]
rs7103393	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106201	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7121567	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729416	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7934042	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7117096	GALNTL4	cis	cerebellum	SCAN
rs7117096	CALCB	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15604200-15618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:15606200-15611800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:15606400-15610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:15606600-15611600	Weak transcription	Right Ventricle	heart
6	chr11:15606800-15616000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:15607800-15612400	Weak transcription	Fetal Intestine Large	intestine
8	chr11:15608000-15612400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:15608600-15611800	Weak transcription	Left Ventricle	heart
10	chr11:15608600-15616200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:15608800-15611600	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:15609000-15612600	Weak transcription	Right Atrium	heart

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