Variant report

Variant	rs10832481
Chromosome Location	chr11:15608760-15608761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1010653	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766267	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs10766268	0.81[EUR][1000 genomes]
rs10766269	0.81[EUR][1000 genomes]
rs10766271	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832471	0.81[EUR][1000 genomes]
rs10832472	0.81[EUR][1000 genomes]
rs10832474	0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs10832480	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023644	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023650	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12272473	0.82[EUR][1000 genomes]
rs12284635	0.80[EUR][1000 genomes]
rs1552305	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880393	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880395	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351046	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2351050	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351057	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4032487	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4756814	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103393	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106201	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7117096	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121567	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729416	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7934042	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10832481	FAM171A1	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15604200-15618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:15606200-15611800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:15606400-15610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:15606600-15611600	Weak transcription	Right Ventricle	heart
6	chr11:15606800-15616000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:15607600-15608800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:15607600-15609000	Enhancers	Psoas Muscle	Psoas
9	chr11:15607800-15612400	Weak transcription	Fetal Intestine Large	intestine
10	chr11:15608000-15612400	Weak transcription	Fetal Intestine Small	intestine
11	chr11:15608200-15608800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:15608400-15608800	Weak transcription	Right Atrium	heart
13	chr11:15608600-15611800	Weak transcription	Left Ventricle	heart
14	chr11:15608600-15616200	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links