Variant report

Variant	rs1919568
Chromosome Location	chr3:82047571-82047572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17019544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57027601	1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	1.00[EUR][1000 genomes]
rs57560125	1.00[EUR][1000 genomes]
rs57996908	1.00[EUR][1000 genomes]
rs58087753	1.00[EUR][1000 genomes]
rs58504250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	1.00[EUR][1000 genomes]
rs61484580	1.00[EUR][1000 genomes]
rs72895828	1.00[EUR][1000 genomes]
rs72895832	1.00[EUR][1000 genomes]
rs72895840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895845	1.00[EUR][1000 genomes]
rs72895859	1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897645	1.00[EUR][1000 genomes]
rs72897657	1.00[EUR][1000 genomes]
rs72897666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897671	1.00[EUR][1000 genomes]
rs72897675	1.00[EUR][1000 genomes]
rs72897678	1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	1.00[EUR][1000 genomes]
rs72897684	1.00[EUR][1000 genomes]
rs72897700	1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	1.00[EUR][1000 genomes]
rs72899627	1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899652	1.00[EUR][1000 genomes]
rs72899670	1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	1.00[EUR][1000 genomes]
rs72901650	1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82044200-82049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:82046600-82048200	Enhancers	Fetal Heart	heart
4	chr3:82046600-82049600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:82047000-82048200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:82047000-82048200	Enhancers	Fetal Lung	lung
7	chr3:82047000-82048400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:82047000-82048400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:82047000-82048800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:82047200-82047600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:82047200-82047600	Enhancers	Fetal Muscle Leg	muscle
12	chr3:82047200-82047600	Enhancers	Fetal Stomach	stomach
13	chr3:82047200-82047600	Enhancers	HSMMtube	muscle
14	chr3:82047200-82047800	Enhancers	Adipose Nuclei	Adipose
15	chr3:82047200-82047800	Enhancers	Liver	Liver
16	chr3:82047200-82047800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:82047200-82048000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:82047200-82052800	Enhancers	Brain Germinal Matrix	brain
19	chr3:82047400-82047800	Enhancers	Brain Hippocampus Middle	brain
20	chr3:82047400-82047800	Enhancers	Fetal Brain Male	brain
21	chr3:82047400-82047800	Enhancers	Fetal Brain Female	brain

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