Variant report

Variant	rs1954213
Chromosome Location	chr10:119143950-119143951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119143112..119144922-chr10:119146819..119149233,2	K562	blood:
2	chr10:119132975..119135941-chr10:119143475..119147361,3	MCF-7	breast:
3	chr10:119142776..119144922-chr10:119146819..119151115,5	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1008448	0.85[ASN][1000 genomes]
rs10787770	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10886054	0.81[ASN][1000 genomes]
rs10886061	0.88[ASN][1000 genomes]
rs10886063	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10886064	0.88[ASN][1000 genomes]
rs10886065	0.86[ASN][1000 genomes]
rs11197960	0.88[ASN][1000 genomes]
rs11197968	0.88[ASN][1000 genomes]
rs11197969	0.88[ASN][1000 genomes]
rs11197970	0.88[ASN][1000 genomes]
rs11197974	0.89[ASN][1000 genomes]
rs11197975	0.90[ASN][1000 genomes]
rs11197976	0.90[ASN][1000 genomes]
rs11197977	0.91[ASN][1000 genomes]
rs11197981	0.92[ASN][1000 genomes]
rs11498892	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12243133	0.92[ASN][1000 genomes]
rs12243628	0.88[ASN][1000 genomes]
rs12247698	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12256994	0.92[ASN][1000 genomes]
rs12263512	0.88[ASN][1000 genomes]
rs12269460	0.88[ASN][1000 genomes]
rs12413507	0.87[ASN][1000 genomes]
rs12573009	0.87[ASN][1000 genomes]
rs1468563	0.88[ASN][1000 genomes]
rs181440	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1935166	0.88[ASN][1000 genomes]
rs1935167	0.88[ASN][1000 genomes]
rs1935168	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1954212	0.80[ASN][1000 genomes]
rs2052075	0.80[ASN][1000 genomes]
rs2096112	0.85[ASN][1000 genomes]
rs2255367	0.87[ASN][1000 genomes]
rs2275670	0.90[ASN][1000 genomes]
rs2275671	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2420457	0.90[ASN][1000 genomes]
rs2429505	0.87[ASN][1000 genomes]
rs2487692	0.80[ASN][1000 genomes]
rs2490626	0.80[ASN][1000 genomes]
rs2490628	0.81[ASN][1000 genomes]
rs2490631	0.80[ASN][1000 genomes]
rs2532781	0.80[ASN][1000 genomes]
rs2532782	0.80[ASN][1000 genomes]
rs2532783	0.80[ASN][1000 genomes]
rs2532784	0.80[ASN][1000 genomes]
rs2532785	0.80[ASN][1000 genomes]
rs2532786	0.80[ASN][1000 genomes]
rs2532787	0.80[ASN][1000 genomes]
rs2532788	0.80[ASN][1000 genomes]
rs2532789	0.87[ASN][1000 genomes]
rs2532792	0.87[ASN][1000 genomes]
rs2532793	0.87[ASN][1000 genomes]
rs2532795	0.87[ASN][1000 genomes]
rs2532796	0.87[ASN][1000 genomes]
rs2532813	0.80[ASN][1000 genomes]
rs2532815	0.80[ASN][1000 genomes]
rs2532817	0.80[ASN][1000 genomes]
rs2532834	0.80[ASN][1000 genomes]
rs2532835	0.80[ASN][1000 genomes]
rs2532836	0.80[ASN][1000 genomes]
rs2532838	0.80[ASN][1000 genomes]
rs2532839	0.80[ASN][1000 genomes]
rs2532841	0.85[ASN][1000 genomes]
rs2532842	0.80[ASN][1000 genomes]
rs2532844	0.87[ASN][1000 genomes]
rs2794414	0.82[ASN][1000 genomes]
rs2794416	0.87[ASN][1000 genomes]
rs2794418	0.85[ASN][1000 genomes]
rs2794419	0.80[ASN][1000 genomes]
rs2794421	0.81[ASN][1000 genomes]
rs2794435	0.80[ASN][1000 genomes]
rs2794436	0.80[ASN][1000 genomes]
rs2803799	0.80[ASN][1000 genomes]
rs2803801	0.80[ASN][1000 genomes]
rs2803802	0.80[ASN][1000 genomes]
rs2803803	0.82[ASN][1000 genomes]
rs2803804	0.82[ASN][1000 genomes]
rs2803807	0.80[ASN][1000 genomes]
rs2803810	0.80[ASN][1000 genomes]
rs2803816	0.80[ASN][1000 genomes]
rs34247425	0.88[ASN][1000 genomes]
rs363242	0.80[ASN][1000 genomes]
rs363243	0.80[ASN][1000 genomes]
rs3814229	0.89[ASN][1000 genomes]
rs3814230	0.89[ASN][1000 genomes]
rs4751623	0.88[ASN][1000 genomes]
rs4752054	0.88[ASN][1000 genomes]
rs6585431	0.87[ASN][1000 genomes]
rs7070594	0.90[ASN][1000 genomes]
rs7072027	0.88[ASN][1000 genomes]
rs7072785	0.87[ASN][1000 genomes]
rs7086651	0.90[ASN][1000 genomes]
rs7087395	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088401	0.88[ASN][1000 genomes]
rs72825530	0.87[ASN][1000 genomes]
rs7897828	0.80[ASN][1000 genomes]
rs7898092	0.80[ASN][1000 genomes]
rs7900191	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7901203	0.88[ASN][1000 genomes]
rs7902237	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979992	0.88[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1954213	SLC18A2	cis	Artery Tibial	GTEx
rs1954213	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs1954213	PDZD8	cis	Artery Aorta	GTEx
rs1954213	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs1954213	SLC18A2	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119143000-119146200	Weak transcription	K562	blood
2	chr10:119143200-119147000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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