Variant report

Variant	rs1970783
Chromosome Location	chr22:33004201-33004202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16990849	0.88[ASN][1000 genomes]
rs2003815	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2858743	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28835002	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5749472	0.89[ASN][1000 genomes]
rs5754167	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754171	0.89[ASN][1000 genomes]
rs5754172	0.89[ASN][1000 genomes]
rs5754173	0.89[ASN][1000 genomes]
rs5754174	0.85[ASN][1000 genomes]
rs58377860	0.86[ASN][1000 genomes]
rs60207395	0.85[ASN][1000 genomes]
rs61110043	0.88[ASN][1000 genomes]
rs73154345	0.88[ASN][1000 genomes]
rs73154346	0.89[ASN][1000 genomes]
rs762968	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33002600-33009800	Weak transcription	Fetal Kidney	kidney
2	chr22:33003200-33004400	Enhancers	Fetal Stomach	stomach
3	chr22:33003200-33004600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr22:33003200-33005000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr22:33004000-33008800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:33004000-33009400	Weak transcription	Spleen	Spleen
7	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
9	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
10	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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