Variant report

Variant	rs58377860
Chromosome Location	chr22:33012466-33012467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33012442..33014400-chr22:33241656..33243487,2	K562	blood:
2	chr22:33012442..33015422-chr22:33150856..33153115,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16990831	0.84[ASN][1000 genomes]
rs16990849	0.98[ASN][1000 genomes]
rs1970783	0.86[ASN][1000 genomes]
rs2003815	0.86[ASN][1000 genomes]
rs2858743	0.83[ASN][1000 genomes]
rs28835002	0.87[ASN][1000 genomes]
rs5749472	0.97[ASN][1000 genomes]
rs5754167	0.86[ASN][1000 genomes]
rs5754171	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5754172	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5754173	0.97[ASN][1000 genomes]
rs5754174	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60207395	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61110043	0.95[ASN][1000 genomes]
rs73154345	0.95[ASN][1000 genomes]
rs73154346	0.97[ASN][1000 genomes]
rs762968	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung
2	chr22:33010400-33013000	Weak transcription	Fetal Kidney	kidney
3	chr22:33010400-33017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:33011400-33015800	Enhancers	Fetal Stomach	stomach
5	chr22:33011600-33012600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr22:33011600-33012600	Enhancers	Placenta	Placenta
7	chr22:33011600-33015000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr22:33011600-33015200	Enhancers	Fetal Muscle Trunk	muscle
9	chr22:33011600-33015200	Enhancers	Fetal Muscle Leg	muscle
10	chr22:33011800-33012600	Enhancers	Fetal Heart	heart
11	chr22:33011800-33012600	Enhancers	Lung	lung
12	chr22:33011800-33012600	Enhancers	Right Atrium	heart
13	chr22:33011800-33012800	Flanking Active TSS	HepG2	liver
14	chr22:33011800-33013000	Enhancers	Left Ventricle	heart
15	chr22:33011800-33014400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr22:33011800-33015200	Weak transcription	Hela-S3	cervix
17	chr22:33012000-33016000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr22:33012200-33012800	Weak transcription	Esophagus	oesophagus
19	chr22:33012200-33012800	Weak transcription	Right Ventricle	heart
20	chr22:33012200-33013400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr22:33012200-33013400	Weak transcription	Small Intestine	intestine
22	chr22:33012200-33013800	Weak transcription	Psoas Muscle	Psoas
23	chr22:33012200-33014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr22:33012400-33012600	Enhancers	Adipose Nuclei	Adipose
25	chr22:33012400-33013000	Enhancers	Spleen	Spleen
26	chr22:33012400-33017600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr22:33012400-33017800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr22:33012400-33018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links