Variant report

Variant	rs2858743
Chromosome Location	chr22:33003022-33003023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16990849	0.84[ASN][1000 genomes]
rs1970783	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2003815	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28835002	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5749472	0.86[ASN][1000 genomes]
rs5754167	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5754171	0.85[ASN][1000 genomes]
rs5754172	0.85[ASN][1000 genomes]
rs5754173	0.85[ASN][1000 genomes]
rs5754174	0.83[ASN][1000 genomes]
rs58377860	0.83[ASN][1000 genomes]
rs60207395	0.83[ASN][1000 genomes]
rs61110043	0.84[ASN][1000 genomes]
rs73154345	0.84[ASN][1000 genomes]
rs73154346	0.86[ASN][1000 genomes]
rs762968	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32998800-33004000	Enhancers	Placenta	Placenta
2	chr22:32999600-33004000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:33000200-33003400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr22:33000600-33003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr22:33000600-33003200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr22:33000600-33003200	Weak transcription	Left Ventricle	heart
7	chr22:33001200-33003800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr22:33001600-33003400	Enhancers	Fetal Thymus	thymus
9	chr22:33001600-33003800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr22:33001600-33004000	Enhancers	Lung	lung
11	chr22:33001800-33003800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr22:33001800-33004000	Enhancers	Spleen	Spleen
13	chr22:33002000-33003400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:33002000-33004000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr22:33002200-33004000	Enhancers	HepG2	liver
16	chr22:33002400-33003200	Weak transcription	Fetal Muscle Leg	muscle
17	chr22:33002400-33003200	Weak transcription	Fetal Stomach	stomach
18	chr22:33002600-33009800	Weak transcription	Fetal Kidney	kidney
19	chr22:33003000-33003200	Enhancers	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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