Variant report

Variant	rs5754174
Chromosome Location	chr22:33009408-33009409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16990831	0.88[ASN][1000 genomes]
rs16990849	0.97[ASN][1000 genomes]
rs1970783	0.85[ASN][1000 genomes]
rs2003815	0.85[ASN][1000 genomes]
rs2858743	0.83[ASN][1000 genomes]
rs28835002	0.85[ASN][1000 genomes]
rs5749472	0.95[ASN][1000 genomes]
rs5754167	0.85[ASN][1000 genomes]
rs5754171	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5754172	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5754173	0.96[ASN][1000 genomes]
rs58377860	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60207395	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61110043	0.93[ASN][1000 genomes]
rs73154345	0.93[ASN][1000 genomes]
rs73154346	0.95[ASN][1000 genomes]
rs762968	0.85[ASN][1000 genomes]
rs9621508	0.81[EUR][1000 genomes]
rs988670	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33002600-33009800	Weak transcription	Fetal Kidney	kidney
2	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
4	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
5	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung
6	chr22:33008800-33010600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr22:33009400-33010200	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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