Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16990831	0.84[CHB][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16990857	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16990872	1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1970783	0.88[ASN][1000 genomes]
rs2003815	0.88[ASN][1000 genomes]
rs2858743	0.84[ASN][1000 genomes]
rs28835002	0.89[ASN][1000 genomes]
rs3827336	1.00[YRI][hapmap]
rs5749471	0.88[JPT][hapmap]
rs5749472	0.98[ASN][1000 genomes]
rs5754167	0.88[ASN][1000 genomes]
rs5754171	0.99[ASN][1000 genomes]
rs5754172	0.99[ASN][1000 genomes]
rs5754173	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5754174	0.97[ASN][1000 genomes]
rs58228617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58291507	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58377860	0.98[ASN][1000 genomes]
rs58410126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5998557	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs60207395	0.97[ASN][1000 genomes]
rs61110043	0.97[ASN][1000 genomes]
rs73154345	0.97[ASN][1000 genomes]
rs73154346	0.98[ASN][1000 genomes]
rs73154363	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73154365	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs762968	0.84[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs9609608	1.00[YRI][hapmap]
rs9621508	0.85[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
3	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
4	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung
5	chr22:33008800-33010600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr22:33009800-33010600	Enhancers	Fetal Stomach	stomach
7	chr22:33010200-33010600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:33010200-33011800	Weak transcription	Fetal Heart	heart
9	chr22:33010200-33012400	Weak transcription	Spleen	Spleen
10	chr22:33010400-33010600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr22:33010400-33010600	Enhancers	Right Ventricle	heart
12	chr22:33010400-33011600	Weak transcription	Fetal Muscle Leg	muscle
13	chr22:33010400-33011800	Weak transcription	Lung	lung
14	chr22:33010400-33013000	Weak transcription	Fetal Kidney	kidney
15	chr22:33010400-33017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: