Variant report

Variant	rs5998557
Chromosome Location	chr22:33007038-33007039
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16990849	0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1970783	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2003815	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2858743	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28835002	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5749471	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs5749472	0.90[ASN][1000 genomes]
rs5754167	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5754171	0.89[ASN][1000 genomes]
rs5754172	0.89[ASN][1000 genomes]
rs5754173	0.89[ASN][1000 genomes]
rs5754174	0.85[ASN][1000 genomes]
rs58377860	0.87[ASN][1000 genomes]
rs60207395	0.85[ASN][1000 genomes]
rs61110043	0.89[ASN][1000 genomes]
rs73154345	0.89[ASN][1000 genomes]
rs73154346	0.90[ASN][1000 genomes]
rs762968	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9621508	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33002600-33009800	Weak transcription	Fetal Kidney	kidney
2	chr22:33004000-33008800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr22:33004000-33009400	Weak transcription	Spleen	Spleen
4	chr22:33004000-33011600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr22:33004000-33011600	Weak transcription	Placenta	Placenta
6	chr22:33004000-33011800	Weak transcription	Left Ventricle	heart
7	chr22:33004000-33012600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links