The 2.0 version of rSNPBase

Variant report

Variant rs1987872
Chromosome Location chr1:173977991-173977992
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173942200-173986200 Weak transcription Fetal Brain Male brain
2 chr1:173958600-173987200 Weak transcription Gastric stomach
3 chr1:173962000-173988400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:173962200-173978400 Weak transcription Colonic Mucosa Colon
5 chr1:173962200-173978600 Weak transcription Lung lung
6 chr1:173962200-173983200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:173962200-173984200 Weak transcription Primary T cells from cord blood blood
8 chr1:173962200-173989000 Weak transcription Fetal Kidney kidney
9 chr1:173962200-173989600 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:173962200-173989600 Weak transcription Aorta Aorta
11 chr1:173962200-173989800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:173962200-173990400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:173962400-173987800 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:173962600-173986000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:173962600-173988400 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr1:173962600-173988600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:173962600-173989400 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr1:173962800-173989800 Weak transcription Placenta Placenta
19 chr1:173965000-173989600 Weak transcription Fetal Thymus thymus
20 chr1:173965200-173986600 Weak transcription HUVEC blood vessel
21 chr1:173966200-173981000 Weak transcription Pancreas Pancrea
22 chr1:173966200-173986200 Weak transcription Fetal Brain Female brain
23 chr1:173966200-173989800 Weak transcription Fetal Muscle Leg muscle
24 chr1:173966400-173978400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:173966400-173978400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:173966400-173986600 Weak transcription Thymus Thymus
27 chr1:173966400-173987800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr1:173966400-173989600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:173966400-173989800 Weak transcription Esophagus oesophagus
30 chr1:173967800-173987600 Weak transcription Brain Germinal Matrix brain
31 chr1:173968200-173978400 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:173968400-173983200 Weak transcription Fetal Intestine Small intestine
33 chr1:173968400-173987200 Weak transcription Fetal Intestine Large intestine
34 chr1:173969000-173983000 Weak transcription HepG2 liver
35 chr1:173969200-173978400 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:173969800-173981000 Weak transcription Small Intestine intestine
37 chr1:173970800-173978200 Weak transcription Brain Angular Gyrus brain
38 chr1:173970800-173982200 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:173971200-173988400 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr1:173971400-173980800 Weak transcription Fetal Lung lung
41 chr1:173973800-173980000 Enhancers Primary monocytes fromperipheralblood blood
42 chr1:173974400-173978400 Weak transcription Spleen Spleen
43 chr1:173974600-173986400 Weak transcription HSMM muscle
44 chr1:173975000-173978200 Weak transcription Brain Anterior Caudate brain
45 chr1:173975000-173978200 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:173975000-173978200 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:173975000-173983400 Weak transcription Brain Cingulate Gyrus brain
48 chr1:173975000-173983400 Weak transcription A549 lung
49 chr1:173975000-173984000 Weak transcription Colon Smooth Muscle Colon
50 chr1:173975000-173986400 Weak transcription HMEC breast

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Last update: Aug 31, 2015