Variant report

Variant	rs6665880
Chromosome Location	chr1:173977014-173977015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173975275..173977152-chr1:173983041..173985333,2	K562	blood:
2	chr1:173791497..173794247-chr1:173975403..173977054,2	K562	blood:
3	chr1:173975468..173978620-chr1:173989842..173993310,3	K562	blood:
4	chr1:173974909..173980524-chr1:173986982..173992490,9	MCF-7	breast:
5	chr1:173974072..173982740-chr1:173986260..173992598,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224977	Chromatin interaction
ENSG00000120334	Chromatin interaction
ENSG00000135870	Chromatin interaction
ENSG00000117593	Chromatin interaction

Extended variants
information (count: 161 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10127823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10494491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10798302	0.87[ASW][hapmap];0.92[MEX][hapmap]
rs10912702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912710	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10912716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10912717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10912721	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11489771	0.85[EUR][1000 genomes]
rs12029025	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12058585	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12060191	0.86[EUR][1000 genomes]
rs12060331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12060401	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12063266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12063818	0.86[EUR][1000 genomes]
rs12067580	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12069129	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12071784	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12072602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12072905	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12077782	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12077812	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12083593	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12085939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12086019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12086826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12087212	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12089005	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12089405	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12093885	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12562588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12562959	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12563156	0.87[EUR][1000 genomes]
rs12565352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12565973	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12566022	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12566122	0.82[JPT][hapmap]
rs12566642	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566651	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12566842	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1322776	0.80[EUR][1000 genomes]
rs1322778	0.81[EUR][1000 genomes]
rs1322779	0.85[EUR][1000 genomes]
rs13375205	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1407596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1407597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16828467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16846641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1890881	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap]
rs1987871	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1987872	0.85[ASN][1000 genomes]
rs1987873	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2009083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025241	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2227588	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs2227590	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2227593	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2227594	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2227595	0.88[EUR][1000 genomes]
rs2227597	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2227601	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2227612	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs2295958	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28595073	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2860841	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860845	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36013663	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3980286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4536054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4652283	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs4652298	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4652328	0.92[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs56926540	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57849055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57995528	0.86[EUR][1000 genomes]
rs58092103	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59520434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59960208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60265316	0.84[EUR][1000 genomes]
rs60551050	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61826771	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826774	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61826777	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61826779	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61826780	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61826784	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61826785	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61826823	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61826824	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826826	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61826829	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61826831	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61827889	0.82[ASN][1000 genomes]
rs61827928	0.81[EUR][1000 genomes]
rs61827930	0.81[EUR][1000 genomes]
rs61827932	0.81[EUR][1000 genomes]
rs61827933	0.81[EUR][1000 genomes]
rs61827934	0.84[EUR][1000 genomes]
rs61827935	0.81[EUR][1000 genomes]
rs61827936	0.85[EUR][1000 genomes]
rs61827938	0.88[EUR][1000 genomes]
rs61827956	0.93[EUR][1000 genomes]
rs61827957	0.87[EUR][1000 genomes]
rs61827959	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61828895	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828898	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828899	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828900	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828901	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425262	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6425266	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425267	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6425271	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6425272	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6657380	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6661182	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6665720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6668543	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6676307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6677660	0.87[ASW][hapmap];0.92[MEX][hapmap]
rs6680088	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6683276	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6688176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6689285	0.87[ASW][hapmap];0.92[MEX][hapmap]
rs6695887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6695940	0.92[EUR][1000 genomes]
rs6698123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6702454	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6703547	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs677	0.84[EUR][1000 genomes]
rs724416	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73039035	0.87[EUR][1000 genomes]
rs7523504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528380	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7530661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7547880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7549291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs767053	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9283385	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9286896	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9425431	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9425433	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9425434	0.86[EUR][1000 genomes]
rs9425436	0.88[EUR][1000 genomes]
rs9425762	0.86[EUR][1000 genomes]
rs9425773	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9425775	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9425779	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9425780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs961148	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs965498	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9728376	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv872551	chr1:173913804-174025660	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6665880	SERPINC1	cis	Thyroid	GTEx
rs6665880	SERPINC1	cis	Esophagus Mucosa	GTEx
rs6665880	SERPINC1	cis	lung	GTEx
rs6665880	SERPINC1	cis	Muscle Skeletal	GTEx
rs6665880	SERPINC1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173915600-173977800	Weak transcription	Stomach Mucosa	stomach
2	chr1:173942200-173986200	Weak transcription	Fetal Brain Male	brain
3	chr1:173958600-173987200	Weak transcription	Gastric	stomach
4	chr1:173962000-173988400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:173962200-173977200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:173962200-173978400	Weak transcription	Colonic Mucosa	Colon
7	chr1:173962200-173978600	Weak transcription	Lung	lung
8	chr1:173962200-173983200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:173962200-173984200	Weak transcription	Primary T cells from cord blood	blood
10	chr1:173962200-173989000	Weak transcription	Fetal Kidney	kidney
11	chr1:173962200-173989600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:173962200-173989600	Weak transcription	Aorta	Aorta
13	chr1:173962200-173989800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:173962200-173990400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:173962400-173977400	Weak transcription	Hela-S3	cervix
16	chr1:173962400-173987800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:173962600-173986000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:173962600-173988400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:173962600-173988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:173962600-173989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:173962800-173989800	Weak transcription	Placenta	Placenta
22	chr1:173965000-173989600	Weak transcription	Fetal Thymus	thymus
23	chr1:173965200-173986600	Weak transcription	HUVEC	blood vessel
24	chr1:173966200-173977600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr1:173966200-173981000	Weak transcription	Pancreas	Pancrea
26	chr1:173966200-173986200	Weak transcription	Fetal Brain Female	brain
27	chr1:173966200-173989800	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:173966400-173978400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:173966400-173978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:173966400-173986600	Weak transcription	Thymus	Thymus
31	chr1:173966400-173987800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:173966400-173989600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:173966400-173989800	Weak transcription	Esophagus	oesophagus
34	chr1:173967800-173987600	Weak transcription	Brain Germinal Matrix	brain
35	chr1:173968200-173978400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr1:173968400-173983200	Weak transcription	Fetal Intestine Small	intestine
37	chr1:173968400-173987200	Weak transcription	Fetal Intestine Large	intestine
38	chr1:173969000-173983000	Weak transcription	HepG2	liver
39	chr1:173969200-173978400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr1:173969800-173981000	Weak transcription	Small Intestine	intestine
41	chr1:173970800-173978200	Weak transcription	Brain Angular Gyrus	brain
42	chr1:173970800-173982200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr1:173971000-173977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr1:173971200-173988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:173971400-173980800	Weak transcription	Fetal Lung	lung
46	chr1:173972800-173977800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr1:173973800-173980000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr1:173974400-173978400	Weak transcription	Spleen	Spleen
49	chr1:173974600-173977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:173974600-173986400	Weak transcription	HSMM	muscle

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