The 2.0 version of rSNPBase

Variant report

Variant rs9425431
Chromosome Location chr1:173862626-173862627
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173838200-173866000 Weak transcription Small Intestine intestine
2 chr1:173839000-173862800 Weak transcription HMEC breast
3 chr1:173841000-173864400 Weak transcription Fetal Heart heart
4 chr1:173841000-173868600 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:173853400-173865200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:173855400-173863000 Weak transcription NHEK skin
7 chr1:173855400-173868000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:173855600-173866800 Weak transcription Pancreas Pancrea
9 chr1:173855600-173875400 Weak transcription NH-A brain
10 chr1:173855800-173863400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:173855800-173873000 Weak transcription Fetal Intestine Small intestine
12 chr1:173855800-173880400 Weak transcription Thymus Thymus
13 chr1:173856000-173864200 Weak transcription Fetal Stomach stomach
14 chr1:173856000-173864400 Weak transcription Duodenum Mucosa Duodenum
15 chr1:173856000-173865400 Weak transcription Esophagus oesophagus
16 chr1:173856000-173868400 Weak transcription Hela-S3 cervix
17 chr1:173856000-173868600 Weak transcription Brain Angular Gyrus brain
18 chr1:173856000-173869400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:173856000-173869800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:173856000-173872600 Weak transcription Fetal Thymus thymus
21 chr1:173856000-173883000 Weak transcription Right Ventricle heart
22 chr1:173856200-173862800 Weak transcription K562 blood
23 chr1:173856200-173863400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr1:173856200-173863600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:173856200-173863600 Weak transcription Placenta Amnion Placenta Amnion
26 chr1:173856200-173864200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:173856200-173864800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:173856200-173865600 Weak transcription Dnd41 blood
29 chr1:173856200-173866200 Weak transcription GM12878-XiMat blood
30 chr1:173856200-173867800 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:173856200-173868800 Weak transcription H9 Cell Line embryonic stem cell
32 chr1:173856200-173868800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr1:173856200-173869800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:173856200-173872800 Weak transcription Ovary ovary
35 chr1:173856200-173875400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:173856200-173878400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:173856200-173880400 Weak transcription Psoas Muscle Psoas
38 chr1:173856400-173864200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr1:173856400-173867200 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr1:173856400-173868200 Weak transcription Rectal Smooth Muscle rectum
41 chr1:173856400-173873800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:173856400-173876000 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr1:173856400-173880000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:173856600-173868000 Weak transcription NHDF-Ad bronchial
45 chr1:173856600-173881200 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr1:173856600-173907200 Weak transcription Brain Germinal Matrix brain
47 chr1:173856800-173868800 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr1:173857000-173866200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:173857000-173883800 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr1:173857200-173866200 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015