The 2.0 version of rSNPBase

Variant report

Variant rs9425780
Chromosome Location chr1:173903300-173903301
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173856600-173907200 Weak transcription Brain Germinal Matrix brain
2 chr1:173871200-173908400 Weak transcription Spleen Spleen
3 chr1:173882800-173912400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:173893400-173908400 Weak transcription Colonic Mucosa Colon
5 chr1:173894000-173904800 Weak transcription Brain Cingulate Gyrus brain
6 chr1:173894400-173905000 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr1:173894600-173907800 Weak transcription Colon Smooth Muscle Colon
8 chr1:173894600-173914400 Weak transcription Right Ventricle heart
9 chr1:173895000-173903400 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr1:173895200-173912200 Weak transcription Stomach Mucosa stomach
11 chr1:173895400-173907600 Weak transcription Ovary ovary
12 chr1:173895600-173906200 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:173895800-173906200 Weak transcription HepG2 liver
14 chr1:173896400-173907800 Weak transcription Gastric stomach
15 chr1:173896400-173910000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr1:173896400-173914400 Weak transcription Pancreas Pancrea
17 chr1:173896800-173908400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:173897000-173907800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:173897000-173908400 Weak transcription Fetal Intestine Small intestine
20 chr1:173897400-173907200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:173897600-173903600 Weak transcription Brain Hippocampus Middle brain
22 chr1:173897600-173907200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:173897800-173907600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:173898000-173903400 Weak transcription Fetal Muscle Leg muscle
25 chr1:173898000-173907800 Weak transcription Fetal Stomach stomach
26 chr1:173898000-173915200 Weak transcription Aorta Aorta
27 chr1:173898200-173903600 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:173898200-173904800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:173898200-173907800 Weak transcription Thymus Thymus
30 chr1:173898200-173908800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:173898200-173910000 Weak transcription H9 Cell Line embryonic stem cell
32 chr1:173898200-173910200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr1:173898200-173912200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:173898400-173903600 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:173898400-173907200 Weak transcription Primary hematopoietic stem cells blood
36 chr1:173898600-173905400 Weak transcription Rectal Smooth Muscle rectum
37 chr1:173898600-173906200 Weak transcription Fetal Kidney kidney
38 chr1:173898600-173906800 Weak transcription Stomach Smooth Muscle stomach
39 chr1:173898800-173907400 Weak transcription Placenta Amnion Placenta Amnion
40 chr1:173898800-173912200 Weak transcription NHEK skin
41 chr1:173899000-173903400 Weak transcription Fetal Thymus thymus
42 chr1:173899000-173906400 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr1:173899200-173903400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr1:173899200-173913800 Weak transcription Fetal Heart heart
45 chr1:173899400-173903600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:173899400-173903800 Strong transcription Muscle Satellite Cultured Cells --
47 chr1:173899400-173904800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:173899400-173906600 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr1:173899400-173917400 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr1:173899400-173927200 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015