The 2.0 version of rSNPBase

Variant report

Variant rs12565973
Chromosome Location chr1:173989219-173989220
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173962200-173989600 Weak transcription H1 Cell Line embryonic stem cell
2 chr1:173962200-173989600 Weak transcription Aorta Aorta
3 chr1:173962200-173989800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:173962200-173990400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:173962600-173989400 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr1:173962800-173989800 Weak transcription Placenta Placenta
7 chr1:173965000-173989600 Weak transcription Fetal Thymus thymus
8 chr1:173966200-173989800 Weak transcription Fetal Muscle Leg muscle
9 chr1:173966400-173989600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:173966400-173989800 Weak transcription Esophagus oesophagus
11 chr1:173976600-173990000 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:173978800-173990200 Weak transcription Spleen Spleen
13 chr1:173979800-173989600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:173981400-173989800 Weak transcription Pancreas Pancrea
15 chr1:173983000-173989600 Enhancers Liver Liver
16 chr1:173984000-173989600 Enhancers Primary monocytes fromperipheralblood blood
17 chr1:173984800-173989600 Enhancers Primary T regulatory cells fromperipheralblood blood
18 chr1:173985200-173989600 Weak transcription Primary B cells from peripheral blood blood
19 chr1:173985200-173989800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:173985800-173989400 Enhancers Primary T helper cells PMA-I stimulated --
21 chr1:173985800-173989400 Enhancers HepG2 liver
22 chr1:173986000-173989400 Enhancers Brain Anterior Caudate brain
23 chr1:173986000-173989600 Enhancers Primary T cells from cord blood blood
24 chr1:173986000-173989600 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr1:173986000-173989600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:173986000-173989600 Enhancers Adipose Nuclei Adipose
27 chr1:173986000-173990000 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr1:173986000-173990200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr1:173986200-173989400 Enhancers Primary T killer naive cells fromperipheralblood blood
30 chr1:173986200-173989400 Enhancers Colon Smooth Muscle Colon
31 chr1:173986200-173989400 Enhancers Fetal Brain Male brain
32 chr1:173986200-173989800 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr1:173986400-173989400 Enhancers Fetal Lung lung
34 chr1:173986400-173989600 Enhancers Brain Inferior Temporal Lobe brain
35 chr1:173986400-173989800 Enhancers Skeletal Muscle Male skeletal muscle
36 chr1:173986800-173989800 Weak transcription HSMM muscle
37 chr1:173987000-173989600 Enhancers Primary neutrophils fromperipheralblood blood
38 chr1:173987200-173989800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:173987200-173989800 Weak transcription Left Ventricle heart
40 chr1:173987400-173989800 Weak transcription Lung lung
41 chr1:173987400-173990000 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr1:173987600-173989400 Genic enhancers Primary hematopoietic stem cells short term culture blood
43 chr1:173987600-173989400 Enhancers Brain Hippocampus Middle brain
44 chr1:173987600-173989600 Weak transcription Fetal Stomach stomach
45 chr1:173987800-173989400 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:173987800-173989400 Enhancers Muscle Satellite Cultured Cells --
47 chr1:173987800-173989400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
48 chr1:173987800-173989600 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr1:173987800-173989600 Enhancers Rectal Mucosa Donor 31 rectum
50 chr1:173987800-173989600 Enhancers Osteobl bone

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Last update: Aug 31, 2015