The 2.0 version of rSNPBase

Variant report

Variant rs61828583
Chromosome Location chr1:174193120-174193121
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174174200-174200200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:174175400-174200200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:174176000-174222400 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:174176800-174222400 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:174177200-174212000 Weak transcription Lung lung
6 chr1:174178600-174212200 Weak transcription Psoas Muscle Psoas
7 chr1:174186600-174216600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr1:174186800-174200400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr1:174186800-174200600 Weak transcription Fetal Stomach stomach
10 chr1:174186800-174200600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:174186800-174208000 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr1:174186800-174212800 Weak transcription Fetal Heart heart
13 chr1:174186800-174213200 Weak transcription Ovary ovary
14 chr1:174186800-174217000 Weak transcription Brain Angular Gyrus brain
15 chr1:174186800-174232000 Weak transcription HSMMtube muscle
16 chr1:174187000-174199600 Weak transcription A549 lung
17 chr1:174187000-174217000 Weak transcription Pancreas Pancrea
18 chr1:174187400-174200400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr1:174187400-174208000 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:174187600-174199800 Weak transcription Rectal Smooth Muscle rectum
21 chr1:174188400-174202000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:174188600-174202000 Weak transcription Fetal Muscle Leg muscle
23 chr1:174188600-174213400 Weak transcription Spleen Spleen
24 chr1:174189000-174232000 Weak transcription HSMM muscle
25 chr1:174189200-174200200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr1:174189200-174216800 Weak transcription Small Intestine intestine
27 chr1:174189400-174203200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:174189400-174203400 Weak transcription Brain Hippocampus Middle brain
29 chr1:174189600-174203200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:174189600-174215400 Weak transcription NH-A brain
31 chr1:174190200-174193200 Strong transcription Hela-S3 cervix
32 chr1:174190200-174204200 Weak transcription Brain Germinal Matrix brain
33 chr1:174190600-174200400 Weak transcription NHDF-Ad bronchial
34 chr1:174191000-174215600 Weak transcription Fetal Brain Male brain
35 chr1:174191400-174194000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:174191400-174215400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:174191400-174232000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:174191600-174194600 ZNF genes & repeats GM12878-XiMat blood
39 chr1:174191600-174198600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:174191600-174199600 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr1:174191600-174200200 Weak transcription Primary T cells fromperipheralblood blood
42 chr1:174191600-174200200 Weak transcription Fetal Intestine Large intestine
43 chr1:174191600-174200400 Weak transcription Fetal Muscle Trunk muscle
44 chr1:174191600-174200400 Weak transcription Left Ventricle heart
45 chr1:174191600-174200600 Weak transcription HUES6 Cell Line embryonic stem cell
46 chr1:174191600-174200600 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr1:174191600-174200600 Weak transcription Aorta Aorta
48 chr1:174191600-174208600 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr1:174191600-174213400 Weak transcription Thymus Thymus
50 chr1:174191600-174232200 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015