The 2.0 version of rSNPBase

Variant report

Variant rs61828578
Chromosome Location chr1:174175840-174175841
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174144000-174178200 Weak transcription Left Ventricle heart
2 chr1:174160800-174186600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:174161000-174176200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:174161200-174176600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:174161600-174178600 Weak transcription Primary B cells from cord blood blood
6 chr1:174162000-174189600 Weak transcription Duodenum Mucosa Duodenum
7 chr1:174163800-174178200 Weak transcription Primary hematopoietic stem cells blood
8 chr1:174167200-174178400 Weak transcription Fetal Stomach stomach
9 chr1:174170800-174178000 Weak transcription Fetal Intestine Small intestine
10 chr1:174172200-174179800 ZNF genes & repeats GM12878-XiMat blood
11 chr1:174172800-174190600 Weak transcription Fetal Intestine Large intestine
12 chr1:174172800-174191000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:174173000-174176400 Enhancers Primary T helper cells PMA-I stimulated --
14 chr1:174173200-174191400 Weak transcription Brain Anterior Caudate brain
15 chr1:174173400-174176000 Enhancers Primary T helper naive cells from peripheral blood blood
16 chr1:174173400-174176000 Enhancers Primary T helper cells fromperipheralblood blood
17 chr1:174173400-174176000 Flanking Active TSS K562 blood
18 chr1:174173600-174176000 Enhancers Primary B cells from peripheral blood blood
19 chr1:174173600-174176000 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr1:174173600-174176200 Enhancers Primary T helper 17 cells PMA-I stimulated --
21 chr1:174173600-174176800 Enhancers Primary T killer memory cells from peripheral blood blood
22 chr1:174174000-174186200 Weak transcription Ovary ovary
23 chr1:174174200-174180200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:174174200-174200200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:174174400-174176400 Weak transcription Psoas Muscle Psoas
26 chr1:174174400-174178600 Weak transcription Dnd41 blood
27 chr1:174175000-174176000 Enhancers HUES48 Cell Line embryonic stem cell
28 chr1:174175000-174176000 Enhancers HUES64 Cell Line embryonic stem cell
29 chr1:174175200-174176000 Enhancers iPS-15b Cell Line embryonic stem cell
30 chr1:174175400-174176000 Enhancers HUES6 Cell Line embryonic stem cell
31 chr1:174175400-174176000 Enhancers Primary monocytes fromperipheralblood blood
32 chr1:174175400-174176000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
33 chr1:174175400-174176000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
34 chr1:174175400-174200200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:174175600-174176000 Enhancers Primary T cells from cord blood blood
36 chr1:174175600-174176000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
37 chr1:174175600-174176000 Enhancers Sigmoid Colon Sigmoid Colon
38 chr1:174175600-174176000 Enhancers HSMM muscle
39 chr1:174175600-174176200 Enhancers Primary T regulatory cells fromperipheralblood blood
40 chr1:174175600-174176600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
41 chr1:174175600-174176600 Enhancers NHEK skin
42 chr1:174175800-174176000 Flanking Active TSS Fetal Heart heart
43 chr1:174175800-174176000 Enhancers Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015