Variant report

Variant	rs60039606
Chromosome Location	chr1:174087582-174087583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174084142..174085721-chr1:174085746..174087770,2	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10127823	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494491	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10912716	0.81[ASN][1000 genomes]
rs10912717	0.81[ASN][1000 genomes]
rs10912721	0.84[ASN][1000 genomes]
rs12029025	0.82[ASN][1000 genomes]
rs12060331	0.81[ASN][1000 genomes]
rs12060401	0.81[ASN][1000 genomes]
rs12071784	0.82[ASN][1000 genomes]
rs12072602	0.81[ASN][1000 genomes]
rs12086826	0.81[ASN][1000 genomes]
rs12089005	0.85[ASN][1000 genomes]
rs12089405	0.81[ASN][1000 genomes]
rs12093885	0.81[ASN][1000 genomes]
rs12562344	0.85[EUR][1000 genomes]
rs12562588	0.81[ASN][1000 genomes]
rs12562959	0.82[EUR][1000 genomes]
rs12564848	0.82[EUR][1000 genomes]
rs12564858	0.90[EUR][1000 genomes]
rs12565675	0.89[EUR][1000 genomes]
rs12565973	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12566022	0.82[EUR][1000 genomes]
rs12566642	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12566643	0.90[EUR][1000 genomes]
rs12566842	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12567854	0.88[EUR][1000 genomes]
rs12567864	0.88[EUR][1000 genomes]
rs12737218	0.90[EUR][1000 genomes]
rs1321637	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1407126	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828467	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16846641	0.81[ASN][1000 genomes]
rs16846667	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16846688	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890881	0.90[EUR][1000 genomes]
rs1987873	0.80[ASN][1000 genomes]
rs2015075	0.90[EUR][1000 genomes]
rs2025241	0.82[EUR][1000 genomes]
rs28595073	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2860841	0.81[ASN][1000 genomes]
rs2901784	0.81[ASN][1000 genomes]
rs36013663	0.82[EUR][1000 genomes]
rs3980286	0.81[ASN][1000 genomes]
rs41265242	0.88[EUR][1000 genomes]
rs41266044	0.90[EUR][1000 genomes]
rs4140468	0.90[EUR][1000 genomes]
rs4536054	0.81[ASN][1000 genomes]
rs56926540	0.82[EUR][1000 genomes]
rs57651489	0.82[EUR][1000 genomes]
rs58866024	0.85[EUR][1000 genomes]
rs59311495	0.81[AFR][1000 genomes]
rs59960208	0.82[ASN][1000 genomes]
rs60005461	0.85[EUR][1000 genomes]
rs61826771	0.82[EUR][1000 genomes]
rs61826777	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826779	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826780	0.81[EUR][1000 genomes]
rs61826784	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61826785	0.81[ASN][1000 genomes]
rs61826823	0.81[ASN][1000 genomes]
rs61826824	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61826826	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61826829	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61826831	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61827889	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61827900	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61827901	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61827902	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61827903	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61827904	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61827905	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61828571	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61828574	0.87[EUR][1000 genomes]
rs61828575	0.90[EUR][1000 genomes]
rs61828576	0.90[EUR][1000 genomes]
rs61828577	0.90[EUR][1000 genomes]
rs61828578	0.90[EUR][1000 genomes]
rs61828580	0.90[EUR][1000 genomes]
rs61828583	0.90[EUR][1000 genomes]
rs61828584	0.90[EUR][1000 genomes]
rs61828587	0.90[EUR][1000 genomes]
rs61828589	0.90[EUR][1000 genomes]
rs61828590	0.90[EUR][1000 genomes]
rs61828591	0.90[EUR][1000 genomes]
rs61828592	0.87[EUR][1000 genomes]
rs61828595	0.90[EUR][1000 genomes]
rs61828622	0.82[EUR][1000 genomes]
rs61828624	0.82[EUR][1000 genomes]
rs61828625	0.82[EUR][1000 genomes]
rs61828627	0.80[EUR][1000 genomes]
rs61828895	0.82[EUR][1000 genomes]
rs61828898	0.82[EUR][1000 genomes]
rs61828899	0.82[EUR][1000 genomes]
rs6425267	0.81[ASN][1000 genomes]
rs6425272	0.81[ASN][1000 genomes]
rs6657380	0.81[ASN][1000 genomes]
rs6668543	0.82[ASN][1000 genomes]
rs6680088	0.85[ASN][1000 genomes]
rs6683276	0.81[ASN][1000 genomes]
rs6684527	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6688176	0.81[ASN][1000 genomes]
rs6702454	0.81[ASN][1000 genomes]
rs7523504	0.81[ASN][1000 genomes]
rs7525325	0.89[EUR][1000 genomes]
rs7549291	0.81[ASN][1000 genomes]
rs9425779	0.82[EUR][1000 genomes]
rs961148	0.81[ASN][1000 genomes]
rs965498	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1008314	chr1:174080192-174311023	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv535207	chr1:174080192-174311023	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs60039606	SERPINC1	cis	Muscle Skeletal	GTEx
rs60039606	SERPINC1	cis	lung	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174084600-174088000	Weak transcription	Fetal Heart	heart

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