The 2.0 version of rSNPBase

Variant report

Variant rs9425762
Chromosome Location chr1:173841352-173841353
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173838200-173846600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:173838200-173854200 Weak transcription Gastric stomach
3 chr1:173838200-173866000 Weak transcription Small Intestine intestine
4 chr1:173838400-173844600 Weak transcription Ovary ovary
5 chr1:173838400-173844800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:173838400-173854200 Weak transcription Esophagus oesophagus
7 chr1:173838400-173854800 Weak transcription Aorta Aorta
8 chr1:173838400-173854800 Weak transcription Right Ventricle heart
9 chr1:173838400-173860200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:173838600-173854800 Weak transcription Rectal Smooth Muscle rectum
11 chr1:173838800-173843600 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:173838800-173844400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:173838800-173855800 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:173839000-173848400 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:173839000-173850000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:173839000-173854800 Weak transcription Colon Smooth Muscle Colon
17 chr1:173839000-173862800 Weak transcription HMEC breast
18 chr1:173839200-173850000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:173839200-173855000 Weak transcription A549 lung
20 chr1:173839400-173841400 Genic enhancers Primary B cells from peripheral blood blood
21 chr1:173839400-173841600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:173839400-173844000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:173839400-173847800 Strong transcription Fetal Muscle Trunk muscle
24 chr1:173839400-173847800 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr1:173839400-173849200 Strong transcription Fetal Stomach stomach
26 chr1:173839400-173850000 Strong transcription HUES48 Cell Line embryonic stem cell
27 chr1:173839600-173842800 Strong transcription Fetal Muscle Leg muscle
28 chr1:173839600-173854600 Weak transcription Muscle Satellite Cultured Cells --
29 chr1:173839800-173841800 Genic enhancers Primary T helper naive cells fromperipheralblood blood
30 chr1:173839800-173845400 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:173840000-173841400 Strong transcription Fetal Lung lung
32 chr1:173840000-173841800 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr1:173840000-173842400 Genic enhancers Fetal Brain Female brain
34 chr1:173840000-173842600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr1:173840000-173842600 Enhancers Primary T helper cells fromperipheralblood blood
36 chr1:173840000-173842800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
37 chr1:173840000-173845400 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr1:173840200-173844200 Weak transcription Left Ventricle heart
39 chr1:173840200-173845800 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr1:173840200-173849600 Strong transcription Placenta Placenta
41 chr1:173840200-173854200 Weak transcription Colonic Mucosa Colon
42 chr1:173840200-173854800 Weak transcription H9 Cell Line embryonic stem cell
43 chr1:173840200-173856800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:173840400-173841400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:173840400-173842400 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr1:173840400-173842800 Genic enhancers Primary T helper cells PMA-I stimulated --
47 chr1:173840400-173845800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:173840400-173846400 Weak transcription H1 Cell Line embryonic stem cell
49 chr1:173840400-173846400 Weak transcription Brain Germinal Matrix brain
50 chr1:173840400-173846400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015