The 2.0 version of rSNPBase

Variant report

Variant rs61827932
Chromosome Location chr1:173857992-173857993
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173838200-173866000 Weak transcription Small Intestine intestine
2 chr1:173838400-173860200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:173839000-173862800 Weak transcription HMEC breast
4 chr1:173841000-173864400 Weak transcription Fetal Heart heart
5 chr1:173841000-173868600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:173842800-173859200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:173853200-173858000 Strong transcription Fetal Muscle Leg muscle
8 chr1:173853400-173865200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:173853800-173858600 Strong transcription Placenta Placenta
10 chr1:173854000-173858800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:173854000-173858800 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:173854000-173859400 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:173854200-173858200 Strong transcription Left Ventricle heart
14 chr1:173854200-173858800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr1:173854600-173858400 Strong transcription Fetal Muscle Trunk muscle
16 chr1:173854600-173858600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:173854800-173858600 Strong transcription Liver Liver
18 chr1:173855000-173858800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:173855400-173858200 Weak transcription Colonic Mucosa Colon
20 chr1:173855400-173863000 Weak transcription NHEK skin
21 chr1:173855400-173868000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:173855600-173866800 Weak transcription Pancreas Pancrea
23 chr1:173855600-173875400 Weak transcription NH-A brain
24 chr1:173855800-173858600 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:173855800-173858800 Weak transcription A549 lung
26 chr1:173855800-173859400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:173855800-173860200 Weak transcription Spleen Spleen
28 chr1:173855800-173863400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:173855800-173873000 Weak transcription Fetal Intestine Small intestine
30 chr1:173855800-173880400 Weak transcription Thymus Thymus
31 chr1:173856000-173858000 Weak transcription Brain Substantia Nigra brain
32 chr1:173856000-173858200 Enhancers Primary T helper naive cells fromperipheralblood blood
33 chr1:173856000-173858800 Enhancers ES-I3 Cell Line embryonic stem cell
34 chr1:173856000-173859200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:173856000-173861600 Weak transcription Gastric stomach
36 chr1:173856000-173862400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:173856000-173864200 Weak transcription Fetal Stomach stomach
38 chr1:173856000-173864400 Weak transcription Duodenum Mucosa Duodenum
39 chr1:173856000-173865400 Weak transcription Esophagus oesophagus
40 chr1:173856000-173868400 Weak transcription Hela-S3 cervix
41 chr1:173856000-173868600 Weak transcription Brain Angular Gyrus brain
42 chr1:173856000-173869400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:173856000-173869800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr1:173856000-173872600 Weak transcription Fetal Thymus thymus
45 chr1:173856000-173883000 Weak transcription Right Ventricle heart
46 chr1:173856200-173858000 Weak transcription NHLF lung
47 chr1:173856200-173858200 Weak transcription Lung lung
48 chr1:173856200-173858400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:173856200-173858800 Enhancers Primary neutrophils fromperipheralblood blood
50 chr1:173856200-173860000 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015